Viridominic acid B



Compound IDCDAMM03034
Common nameViridominic acid B
IUPAC name2-(6,16-diacetyloxy-3,7,12-trihydroxy-4,8,10,14-tetramethyl-11-oxo-1,2,3,4,5,6,7,9,12,13,15,16-dodecahydrocyclopenta[a]phenanthren-17-ylidene)-6-methylhept-5-enoic acid
Molecular formulaC33H48O10

Experimental data

Retention time11.2
Adduct[M+H]+
Actual mz605.34
Theoretical mz605.332
Error12.92
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.2977

Identifiers and class information

Inchi keyAFEQECZZRLKRBI-RTUTXXGNNA-N
SmilesO=C(O)C(=C1C(OC(=O)C)CC2(C)C1C(O)C(=O)C3C4(C)CCC(O)C(C)C4C(OC(=O)C)C(O)C32C)CCC=C(C)C
SuperclassLipids and lipid-like molecules
ClassSteroids and steroid derivatives

Plant source

  • Clitoria ternatea L.
  • Pharmacokinetic properties

    Number of descriptor values(#stars)1
    Number of non-conjugated amine groups (#amine)0
    Number of amidine and guanidine groups (#amidine)0
    Number of carboxylic acid groups (#acid)1
    Number of non-conjugated amide groups (#amide)0
    Number of rotatable bonds (#rotor)9
    Number of reactive functional groups (#rtvFG)4
    Predicted central nervous system activity (CNS)-2
    Molecular weight (mol_MW)604.736
    Computed dipole moment(dipole)7.528
    Total solvent accessible surface area (SASA)882.839
    Hydrophobic component of SASA (FOSA)631.381
    Hydrophilic component of SASA (FISA)239.218
    Pie component of the SASA (PISA)12.239
    Weakly polar component of the SASA (WPSA)0
    Total solvent accesible volume (volume)1773.66
    Number of hydrogen bond donors (donorHB)4
    Number of hydrogen bond acceptors (accptHB)13.1
    Free energy of solvation of dipole (dip^2/V)0.0319479
    Index of cohesive interaction in solids (ACxDN^.5/SA)0.029677
    Globularity descriptor (glob)0.802658
    Predicted polarizability in cubic angstroms (QPpolrz)59.166
    Predicted hexadecane/gas partition coefficient (QPlogPC16)17.209
    Predicted octanol/gas partition coefficient (QPlogPoct)33.379
    Predicted water/gas partition coefficient (QPlogPw)20.331
    Predicted octanol/water partition coefficient (QPlogPo/w)3.478
    Predicted aqueous solubility (QPlogS)-5.983
    Conformation-independent predicted aqueous solubility (CIQPlogS)-6.125
    Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-2.976
    Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)13.521
    Predicted brain/blood partition coefficient (QPlogBB)-2.454
    Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)6.006
    Predicted skin permeability, log Kp (QPlogKp)-5.021
    PM3 calculated ionization potential (IP(ev))9.736
    PM3 calculated electron affinity (EA(eV))0.241
    Number of likely metabolic reactions (#metab)10
    Prediction of binding to human serum albumin (QPlogKhsa)0.268
    Predicted qualitative human oral absorption (HumanOralAbsorption)1
    Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)54.594
    Solvent-accessible surface area of fluorine atoms (SAFluorine)0
    Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
    Van der Waals surface area (PSA)187.079
    Number of nitrogen and oxygen atoms (#NandO)10
    Number of violations of Lipinski’s rule of five (RuleOfFive)1
    Number of violations of Jorgensen’s rule of three (RuleOfThree)3

    Compound-target network

    Cytoscape Graph

    Protein targets associated with phytocompound

    Uniprot ID Gene name Target name TTD_ID Prediction source

    Target associated diseases

    TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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