Physagulin F



Compound IDCDAMM02987
Common namePhysagulin F
IUPAC name[6-[1-(4,5-dimethyl-6-oxo-2,3-dihydropyran-2-yl)ethyl]-2,16,17-trihydroxy-7,11-dimethyl-12-oxo-5-oxapentacyclo[8.8.0.02,7.04,6.011,16]octadec-13-en-3-yl] acetate
Molecular formulaC30H40O9

Experimental data

Retention time12.79
Adduct[M+H]+
Actual mz545.28
Theoretical mz545.274
Error10.68
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.191

Identifiers and class information

Inchi keyXIINLGCQYPFDPD-UHFFFAOYNA-N
SmilesO=C1OC(CC(=C1C)C)C(C)C23OC3C(OC(=O)C)C4(O)C5CC(O)C6(O)CC=CC(=O)C6(C)C5CCC42C
SuperclassLipids and lipid-like molecules
ClassSteroids and steroid derivatives

Plant source

  • Clitoria ternatea L.
  • Pharmacokinetic properties

    Number of descriptor values(#stars)0
    Number of non-conjugated amine groups (#amine)0
    Number of amidine and guanidine groups (#amidine)0
    Number of carboxylic acid groups (#acid)0
    Number of non-conjugated amide groups (#amide)0
    Number of rotatable bonds (#rotor)6
    Number of reactive functional groups (#rtvFG)3
    Predicted central nervous system activity (CNS)-2
    Molecular weight (mol_MW)544.641
    Computed dipole moment(dipole)5.135
    Total solvent accessible surface area (SASA)736.304
    Hydrophobic component of SASA (FOSA)493.47
    Hydrophilic component of SASA (FISA)163.736
    Pie component of the SASA (PISA)79.098
    Weakly polar component of the SASA (WPSA)0
    Total solvent accesible volume (volume)1510.46
    Number of hydrogen bond donors (donorHB)2
    Number of hydrogen bond acceptors (accptHB)11.2
    Free energy of solvation of dipole (dip^2/V)0.017457
    Index of cohesive interaction in solids (ACxDN^.5/SA)0.0215118
    Globularity descriptor (glob)0.864664
    Predicted polarizability in cubic angstroms (QPpolrz)51.197
    Predicted hexadecane/gas partition coefficient (QPlogPC16)14.216
    Predicted octanol/gas partition coefficient (QPlogPoct)26.45
    Predicted water/gas partition coefficient (QPlogPw)15.78
    Predicted octanol/water partition coefficient (QPlogPo/w)3.009
    Predicted aqueous solubility (QPlogS)-4.676
    Conformation-independent predicted aqueous solubility (CIQPlogS)-5.968
    Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.099
    Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)277.457
    Predicted brain/blood partition coefficient (QPlogBB)-1.258
    Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)123.74
    Predicted skin permeability, log Kp (QPlogKp)-3.682
    PM3 calculated ionization potential (IP(ev))10.122
    PM3 calculated electron affinity (EA(eV))0.348
    Number of likely metabolic reactions (#metab)7
    Prediction of binding to human serum albumin (QPlogKhsa)0.316
    Predicted qualitative human oral absorption (HumanOralAbsorption)2
    Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)75.333
    Solvent-accessible surface area of fluorine atoms (SAFluorine)0
    Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
    Van der Waals surface area (PSA)150.975
    Number of nitrogen and oxygen atoms (#NandO)9
    Number of violations of Lipinski’s rule of five (RuleOfFive)1
    Number of violations of Jorgensen’s rule of three (RuleOfThree)1

    Compound-target network

    Cytoscape Graph

    Protein targets associated with phytocompound

    Uniprot ID Gene name Target name TTD_ID Prediction source

    Target associated diseases

    TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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