Menthyl pyrrolidone carboxylate



Compound IDCDAMM02931
Common nameMenthyl pyrrolidone carboxylate
IUPAC name2-(hydroxymethyl)-6-(5-methyl-2-propan-2-ylcyclohexyl)oxyoxane-3,4,5-triol
Molecular formulaC16H30O6

Experimental data

Retention time3.23
Adduct[M+H]+
Actual mz319.216
Theoretical mz319.211
Error14.49
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.6143

Identifiers and class information

Inchi keyGZSDZJZIZBGBON-LCWGFQIINA-N
SmilesOCC1OC(OC2CC(C)CCC2C(C)C)C(O)C(O)C1O
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Plant source

  • Clitoria ternatea L.
  • Pharmacokinetic properties

    Number of descriptor values(#stars)1
    Number of non-conjugated amine groups (#amine)0
    Number of amidine and guanidine groups (#amidine)0
    Number of carboxylic acid groups (#acid)0
    Number of non-conjugated amide groups (#amide)0
    Number of rotatable bonds (#rotor)8
    Number of reactive functional groups (#rtvFG)1
    Predicted central nervous system activity (CNS)-2
    Molecular weight (mol_MW)318.409
    Computed dipole moment(dipole)7.437
    Total solvent accessible surface area (SASA)556.19
    Hydrophobic component of SASA (FOSA)421.001
    Hydrophilic component of SASA (FISA)135.189
    Pie component of the SASA (PISA)0
    Weakly polar component of the SASA (WPSA)0
    Total solvent accesible volume (volume)1038.14
    Number of hydrogen bond donors (donorHB)4
    Number of hydrogen bond acceptors (accptHB)10.2
    Free energy of solvation of dipole (dip^2/V)0.0532745
    Index of cohesive interaction in solids (ACxDN^.5/SA)0.0366781
    Globularity descriptor (glob)0.891484
    Predicted polarizability in cubic angstroms (QPpolrz)30.256
    Predicted hexadecane/gas partition coefficient (QPlogPC16)9.874
    Predicted octanol/gas partition coefficient (QPlogPoct)21.515
    Predicted water/gas partition coefficient (QPlogPw)16.118
    Predicted octanol/water partition coefficient (QPlogPo/w)0.592
    Predicted aqueous solubility (QPlogS)-2.174
    Conformation-independent predicted aqueous solubility (CIQPlogS)-1.858
    Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.288
    Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)517.487
    Predicted brain/blood partition coefficient (QPlogBB)-1.053
    Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)242.722
    Predicted skin permeability, log Kp (QPlogKp)-3.243
    PM3 calculated ionization potential (IP(ev))10.426
    PM3 calculated electron affinity (EA(eV))-1.94
    Number of likely metabolic reactions (#metab)4
    Prediction of binding to human serum albumin (QPlogKhsa)-0.585
    Predicted qualitative human oral absorption (HumanOralAbsorption)3
    Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)78.988
    Solvent-accessible surface area of fluorine atoms (SAFluorine)0
    Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
    Van der Waals surface area (PSA)93.687
    Number of nitrogen and oxygen atoms (#NandO)6
    Number of violations of Lipinski’s rule of five (RuleOfFive)0
    Number of violations of Jorgensen’s rule of three (RuleOfThree)0

    Compound-target network

    Cytoscape Graph

    Protein targets associated with phytocompound

    Uniprot ID Gene name Target name TTD_ID Prediction source
    P15692VEGFAVascular endothelial growth factor AT20761SEA
    P05230FGF1Acidic fibroblast growth factorT18639SEA
    P09038FGF2Basic fibroblast growth factorT31621SEA
    P60568IL2Interleukin-2T61698SEA
    P17931LGALS3Galectin-3T72038SEA
    P04746AMY2APancreatic alpha-amylaseT86918SEA
    P14679TYRTyrosinaseT97035SEA
    Q9NZ08ERAP1Endoplasmic reticulum aminopeptidase 1T72849SEA

    Target associated diseases

    TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
    T20761DI0095Colorectal cancer[ICD-11: 2B91]P15692VEGFA
    T20761DI0365Retinopathy[ICD-11: 9B71]P15692VEGFA
    T20761DI0430Vascular system developmental anomaly[ICD-11: LA90]P15692VEGFA
    T18639DI0081Chronic arterial occlusive disease[ICD-11: BD4Z]P05230FGF1
    T18639DI0102Coronary atherosclerosis[ICD-11: BA52]P05230FGF1
    T31621DI0005Acne vulgaris[ICD-11: ED80]P09038FGF2
    T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
    T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
    T72038DI0190Hypertension[ICD-11: BA00-BA04]P17931LGALS3
    T72038DI0199Idiopathic interstitial pneumonitis[ICD-11: CB03]P17931LGALS3
    T72038DI0252Melanoma[ICD-11: 2C30]P17931LGALS3
    T72038DI0302Non-alcoholic fatty liver disease[ICD-11: DB92]P17931LGALS3
    T72038DI0351Psoriasis[ICD-11: EA90]P17931LGALS3
    T86918DI0110Cystic fibrosis[ICD-11: CA25]P04746AMY2A
    T86918DI0328Pancreatic malfunction[ICD-11: DC30-DC3Z]P04746AMY2A
    T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
    T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR

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