Senecioic acid



Compound IDCDAMM02910
Common nameSenecioic acid
IUPAC name3-methylbut-2-enoic acid
Molecular formulaC5H8O2

Experimental data

Retention time0.42
Adduct[M+Na]+
Actual mz123.041
Theoretical mz123.041
Error1.48
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.4442

Identifiers and class information

Inchi keyYYPNJNDODFVZLE-UHFFFAOYSA-N
SmilesO=C(O)C=C(C)C
SuperclassLipids and lipid-like molecules
ClassFatty Acyls

Plant source

  • Clitoria ternatea L.
  • Pharmacokinetic properties

    Number of descriptor values(#stars)6
    Number of non-conjugated amine groups (#amine)0
    Number of amidine and guanidine groups (#amidine)0
    Number of carboxylic acid groups (#acid)1
    Number of non-conjugated amide groups (#amide)0
    Number of rotatable bonds (#rotor)1
    Number of reactive functional groups (#rtvFG)1
    Predicted central nervous system activity (CNS)-1
    Molecular weight (mol_MW)100.117
    Computed dipole moment(dipole)7.062
    Total solvent accessible surface area (SASA)298.284
    Hydrophobic component of SASA (FOSA)177.812
    Hydrophilic component of SASA (FISA)104.694
    Pie component of the SASA (PISA)15.778
    Weakly polar component of the SASA (WPSA)0
    Total solvent accesible volume (volume)438.918
    Number of hydrogen bond donors (donorHB)1
    Number of hydrogen bond acceptors (accptHB)2
    Free energy of solvation of dipole (dip^2/V)0.113637
    Index of cohesive interaction in solids (ACxDN^.5/SA)0.006705
    Globularity descriptor (glob)0.936391
    Predicted polarizability in cubic angstroms (QPpolrz)10.92
    Predicted hexadecane/gas partition coefficient (QPlogPC16)3.439
    Predicted octanol/gas partition coefficient (QPlogPoct)6.881
    Predicted water/gas partition coefficient (QPlogPw)4.47
    Predicted octanol/water partition coefficient (QPlogPo/w)0.955
    Predicted aqueous solubility (QPlogS)-0.781
    Conformation-independent predicted aqueous solubility (CIQPlogS)-0.556
    Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-0.829
    Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)255.083
    Predicted brain/blood partition coefficient (QPlogBB)-0.293
    Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)143.708
    Predicted skin permeability, log Kp (QPlogKp)-3.297
    PM3 calculated ionization potential (IP(ev))10.357
    PM3 calculated electron affinity (EA(eV))0.171
    Number of likely metabolic reactions (#metab)2
    Prediction of binding to human serum albumin (QPlogKhsa)-0.74
    Predicted qualitative human oral absorption (HumanOralAbsorption)3
    Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)75.611
    Solvent-accessible surface area of fluorine atoms (SAFluorine)0
    Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
    Van der Waals surface area (PSA)50.169
    Number of nitrogen and oxygen atoms (#NandO)2
    Number of violations of Lipinski’s rule of five (RuleOfFive)0
    Number of violations of Jorgensen’s rule of three (RuleOfThree)0

    Compound-target network

    Cytoscape Graph

    Protein targets associated with phytocompound

    Uniprot ID Gene name Target name TTD_ID Prediction source

    Target associated diseases

    TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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