(3x,5x,10x)-9,10-Didehydroisohumbertiol O-[rhamnopyranosyl-(1->4)-rhamnopyranosyl-(1->2)-[(E)-feruloyl-(->4)-rhamnosyl-(1->6)]-glucoside]



Compound IDCDAMM02885
Common name(3x,5x,10x)-9,10-Didehydroisohumbertiol O-[rhamnopyranosyl-(1->4)-rhamnopyranosyl-(1->2)-[(E)-feruloyl-(->4)-rhamnosyl-(1->6)]-glucoside]
IUPAC name[6-[[5-[3,4-dihydroxy-6-methyl-5-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxyoxan-2-yl]oxy-3,4-dihydroxy-6-[2-methyl-1-(5-methyl-2-prop-1-en-2-ylcyclohexa-1,5-dien-1-yl)but-3-en-2-yl]oxyoxan-2-yl]methoxy]-4,5-dihydroxy-2-methyloxan-3-yl] 3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate
Molecular formulaC49H70O21

Experimental data

Retention time5.3
Adduct[M+H]+
Actual mz995.449
Theoretical mz995.448
Error0.73
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.1397

Identifiers and class information

Inchi keyUGYZEBXYEVENGE-SSZFMOIBNA-N
SmilesO=C(OC1C(O)C(O)C(OCC2OC(OC(C=C)(C)CC=3C=C(C)CCC3C(=C)C)C(OC4OC(C)C(OC5OC(C)C(O)C(O)C5O)C(O)C4O)C(O)C2O)OC1C)C=CC6=CC=C(O)C(OC)=C6
SuperclassOrganic oxygen compounds
ClassOrganooxygen compounds

Pharmacokinetic properties

Number of descriptor values(#stars)14
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)28
Number of reactive functional groups (#rtvFG)5
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)995.079
Computed dipole moment(dipole)8.186
Total solvent accessible surface area (SASA)1238.63
Hydrophobic component of SASA (FOSA)701.471
Hydrophilic component of SASA (FISA)367.17
Pie component of the SASA (PISA)169.985
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)2722.45
Number of hydrogen bond donors (donorHB)10
Number of hydrogen bond acceptors (accptHB)31.45
Free energy of solvation of dipole (dip^2/V)0.0246128
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0802935
Globularity descriptor (glob)0.761257
Predicted polarizability in cubic angstroms (QPpolrz)86.443
Predicted hexadecane/gas partition coefficient (QPlogPC16)28.793
Predicted octanol/gas partition coefficient (QPlogPoct)61.994
Predicted water/gas partition coefficient (QPlogPw)45.801
Predicted octanol/water partition coefficient (QPlogPo/w)-0.039
Predicted aqueous solubility (QPlogS)-2.674
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.742
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-6.206
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)3.266
Predicted brain/blood partition coefficient (QPlogBB)-5.348
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)1.017
Predicted skin permeability, log Kp (QPlogKp)-4.999
PM3 calculated ionization potential (IP(ev))8.403
PM3 calculated electron affinity (EA(eV))0.998
Number of likely metabolic reactions (#metab)16
Prediction of binding to human serum albumin (QPlogKhsa)-1.446
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)299.255
Number of nitrogen and oxygen atoms (#NandO)21
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P23280CA6Carbonic anhydrase VIT06569SEA
P04746AMY2APancreatic alpha-amylaseT86918SEA
Q9GZQ4NMUR2Neuromedin-U receptor 2T04210SEA
P10636MAPTMicrotubule-associated protein tauT45593SEA
Q04760GLO1Glyoxalase IT88285SEA
Q16236NFE2L2Nuclear factor erythroid 2-related factor 2T88505SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T06569DI0046Bacterial infection[ICD-11: 1A00-1C4Z]P23280CA6
T06569DI0372Seborrhoeic dermatitis[ICD-11: EA81]P23280CA6
T86918DI0110Cystic fibrosis[ICD-11: CA25]P04746AMY2A
T86918DI0328Pancreatic malfunction[ICD-11: DC30-DC3Z]P04746AMY2A
T45593DI0012Acute myeloid leukaemia[ICD-11: 2A60]P10636MAPT
T45593DI0025Alzheimer disease[ICD-11: 8A20]P10636MAPT
T45593DI0265Mild neurocognitive disorder[ICD-11: 6D71]P10636MAPT
T88285DI0210Influenza[ICD-11: 1E30-1E32]Q04760GLO1
T88505DI0038Ataxic disorder[ICD-11: 8A03]Q16236NFE2L2

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