Glycobismine F



Compound IDCDAMM02832
Common nameGlycobismine F
IUPAC name15-hydroxy-2,7,19,19-tetramethyl-7-[2-(1,3,5-trihydroxy-10-methyl-9-oxoacridin-4-yl)ethenyl]-5,8,18-trioxa-2-azapentacyclo[12.8.0.03,12.04,9.017,22]docosa-1(14),3(12),4(9),10,15,17(22),20-heptaen-13-one
Molecular formulaC38H32N2O9

Experimental data

Retention time16.06
Adduct[M+H]+
Actual mz661.221
Theoretical mz661.218
Error3.97
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.2534

Identifiers and class information

Inchi keyPAUHEDRJXMTAAA-OWBHPGMINA-N
SmilesO=C1C=2C=CC=C(O)C2N(C=3C(C=CC4(OC5=CC=C6C(=O)C7=C(O)C=C8OC(C=CC8=C7N(C6=C5OC4)C)(C)C)C)=C(O)C=C(O)C13)C
SuperclassOrganoheterocyclic compounds
ClassQuinolines and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)4
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)6
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)660.679
Computed dipole moment(dipole)6.097
Total solvent accessible surface area (SASA)954.29
Hydrophobic component of SASA (FOSA)354.363
Hydrophilic component of SASA (FISA)232.776
Pie component of the SASA (PISA)367.15
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1843.24
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)8.25
Free energy of solvation of dipole (dip^2/V)0.0201681
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0122261
Globularity descriptor (glob)0.761857
Predicted polarizability in cubic angstroms (QPpolrz)67.266
Predicted hexadecane/gas partition coefficient (QPlogPC16)20.208
Predicted octanol/gas partition coefficient (QPlogPoct)30.967
Predicted water/gas partition coefficient (QPlogPw)15.829
Predicted octanol/water partition coefficient (QPlogPo/w)6.064
Predicted aqueous solubility (QPlogS)-9.423
Conformation-independent predicted aqueous solubility (CIQPlogS)-11.262
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-7.136
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)61.444
Predicted brain/blood partition coefficient (QPlogBB)-2.472
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)24.257
Predicted skin permeability, log Kp (QPlogKp)-3.94
PM3 calculated ionization potential (IP(ev))8.185
PM3 calculated electron affinity (EA(eV))0.649
Number of likely metabolic reactions (#metab)9
Prediction of binding to human serum albumin (QPlogKhsa)1.668
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)55.587
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)158.786
Number of nitrogen and oxygen atoms (#NandO)11
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P11926ODC1Ornithine decarboxylaseT60366SEA
O60911CTSVCathepsin (V and K)T93653SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T60366DI0020African trypanosomiasis[ICD-11: 1F51]P11926ODC1
T93653DI0055Bone cancer[ICD-11: 2B5Z]O60911CTSV
T93653DI0087Chronic pain[ICD-11: MG30]O60911CTSV

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