Castacrenin A



Compound IDCDAMM02822
Common nameCastacrenin A
IUPAC name5-[2-(1,2-dihydroxyethyl)-3,7,8,9-tetrahydroxy-5-oxo-2,3,3a,9b-tetrahydrofuro[3,2-c]isochromen-6-yl]-6,7,13,14-tetrahydroxy-2,9-dioxatetracyclo[6.6.2.04,16.011,15]hexadeca-1(15),4(16),5,7,11,13-hexaene-3,10-dione
Molecular formulaC27H18O17

Experimental data

Retention time18.88
Adduct[M+H]+
Actual mz615.052
Theoretical mz615.061
Error14.43
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.7928

Identifiers and class information

Inchi keyORHDVCFHUVVLAU-UHFFFAOYNA-N
SmilesO=C1OC=2C(O)=C(O)C(=C3C(=O)OC4=C(O)C(O)=CC1=C4C23)C=5C(O)=C(O)C(O)=C6C5C(=O)OC7C(O)C(OC67)C(O)CO
SuperclassPhenylpropanoids and polyketides
ClassTannins

Pharmacokinetic properties

Number of descriptor values(#stars)9
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)3
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)614.429
Computed dipole moment(dipole)7.513
Total solvent accessible surface area (SASA)752.848
Hydrophobic component of SASA (FOSA)122.746
Hydrophilic component of SASA (FISA)532.83
Pie component of the SASA (PISA)97.273
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1444.52
Number of hydrogen bond donors (donorHB)10
Number of hydrogen bond acceptors (accptHB)20.05
Free energy of solvation of dipole (dip^2/V)0.0390712
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0842184
Globularity descriptor (glob)0.820868
Predicted polarizability in cubic angstroms (QPpolrz)44.237
Predicted hexadecane/gas partition coefficient (QPlogPC16)18.305
Predicted octanol/gas partition coefficient (QPlogPoct)42.122
Predicted water/gas partition coefficient (QPlogPw)37.344
Predicted octanol/water partition coefficient (QPlogPo/w)-3.882
Predicted aqueous solubility (QPlogS)-2.272
Conformation-independent predicted aqueous solubility (CIQPlogS)-4.772
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.894
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.088
Predicted brain/blood partition coefficient (QPlogBB)-5.492
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.02
Predicted skin permeability, log Kp (QPlogKp)-9.749
PM3 calculated ionization potential (IP(ev))9.034
PM3 calculated electron affinity (EA(eV))1.25
Number of likely metabolic reactions (#metab)12
Prediction of binding to human serum albumin (QPlogKhsa)-1.299
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)325.575
Number of nitrogen and oxygen atoms (#NandO)17
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
Q4U2R8SLC22A6Solute carrier family 22 member 6 (by homology)T70680SEA
P04637TP53Tumour suppressor p53/oncoprotein Mdm2T15739SEA
P05231IL6Interleukin-6T32578SEA
O35273SMAD3Mothers against decapentaplegic homolog 3T35445SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T70680DI0167Gout[ICD-11: FA25]Q4U2R8SLC22A6
T70680DI0206Inborn purine/pyrimidine/nucleotide metabolism error[ICD-11: 5C55]Q4U2R8SLC22A6
T70680DI0310Ocular disease[ICD-11: N.A.]Q4U2R8SLC22A6
T15739DI0233Lip/oral cavity/pharynx neoplasm[ICD-11: 2B6E]P04637TP53
T15739DI0323Ovarian dysfunction[ICD-11: 5A80]P04637TP53
T15739DI0413Transplant rejection[ICD-11: NE84]P04637TP53
T32578DI0028Anemia[ICD-11: 3A00-3A9Z]P05231IL6
T35445DI0226Kidney fibrosis[ICD-11: GC01]O35273SMAD3

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