Cephalezomine F



Compound IDCDAMM02784
Common nameCephalezomine F
IUPAC name1-O-(4-methoxy-16,18-dioxa-10-azapentacyclo[11.7.0.02,6.06,10.015,19]icosa-1(20),4,13,15(19)-tetraen-3-yl) 4-O-methyl 2,3-dihydroxy-2-(4-methylpentyl)butanedioate
Molecular formulaC29H39NO9

Experimental data

Retention time6.32
Adduct[M+H]+
Actual mz546.27
Theoretical mz546.269
Error2.06
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.741

Identifiers and class information

Inchi keyYVQZPPMOICERRA-HIGAYMJONA-N
SmilesO=C(OC)C(O)C(O)(C(=O)OC1C(OC)=CC23N(CCC4=CC=5OCOC5C=C4C12)CCC3)CCCC(C)C
SuperclassAlkaloids and derivatives
ClassCephalotaxus alkaloids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)11
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)1
Molecular weight (mol_MW)545.628
Computed dipole moment(dipole)2.764
Total solvent accessible surface area (SASA)780.442
Hydrophobic component of SASA (FOSA)583.681
Hydrophilic component of SASA (FISA)93.028
Pie component of the SASA (PISA)103.733
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1589.79
Number of hydrogen bond donors (donorHB)0
Number of hydrogen bond acceptors (accptHB)7.7
Free energy of solvation of dipole (dip^2/V)0.0048054
Index of cohesive interaction in solids (ACxDN^.5/SA)0
Globularity descriptor (glob)0.844081
Predicted polarizability in cubic angstroms (QPpolrz)51.397
Predicted hexadecane/gas partition coefficient (QPlogPC16)14.145
Predicted octanol/gas partition coefficient (QPlogPoct)21.023
Predicted water/gas partition coefficient (QPlogPw)8.094
Predicted octanol/water partition coefficient (QPlogPo/w)4.868
Predicted aqueous solubility (QPlogS)-3.965
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.536
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.276
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)324.051
Predicted brain/blood partition coefficient (QPlogBB)-0.571
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)161.905
Predicted skin permeability, log Kp (QPlogKp)-3.875
PM3 calculated ionization potential (IP(ev))8.848
PM3 calculated electron affinity (EA(eV))-0.118
Number of likely metabolic reactions (#metab)5
Prediction of binding to human serum albumin (QPlogKhsa)0.706
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)87.423
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)121.564
Number of nitrogen and oxygen atoms (#NandO)10
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
Q7RTX1TAS1R1Taste receptorT41263SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T41263DI0078Cholera[ICD-11: 1A00]Q7RTX1TAS1R1

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