3alpha-Dihydrocadambine



Compound IDCDAMM02749
Common name3alpha-Dihydrocadambine
IUPAC namemethyl 15-hydroxy-17-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-18-oxa-3,13-diazapentacyclo[11.9.0.02,10.04,9.016,21]docosa-2(10),4,6,8,19-pentaene-20-carboxylate
Molecular formulaC27H34N2O10

Experimental data

Retention time12.03
Adduct[M+H]+
Actual mz547.223
Theoretical mz547.228
Error9.64
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.6586

Identifiers and class information

Inchi keyHNZGKRAKJFZQAY-XRGZMTHUNA-N
SmilesO=C(OC)C1=COC(OC2OC(CO)C(O)C(O)C2O)C3C(O)CN4CCC=5C=6C=CC=CC6NC5C4CC13
SuperclassOrganoheterocyclic compounds
ClassIndoles and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)9
Number of reactive functional groups (#rtvFG)3
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)546.573
Computed dipole moment(dipole)2.22
Total solvent accessible surface area (SASA)784.542
Hydrophobic component of SASA (FOSA)352.369
Hydrophilic component of SASA (FISA)221.139
Pie component of the SASA (PISA)211.034
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1508.63
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)17.6
Free energy of solvation of dipole (dip^2/V)0.0032672
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0549506
Globularity descriptor (glob)0.810843
Predicted polarizability in cubic angstroms (QPpolrz)50.458
Predicted hexadecane/gas partition coefficient (QPlogPC16)16.605
Predicted octanol/gas partition coefficient (QPlogPoct)35.423
Predicted water/gas partition coefficient (QPlogPw)28.685
Predicted octanol/water partition coefficient (QPlogPo/w)-0.606
Predicted aqueous solubility (QPlogS)-2.267
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.759
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-6.325
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)19.758
Predicted brain/blood partition coefficient (QPlogBB)-1.823
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)7.873
Predicted skin permeability, log Kp (QPlogKp)-6.05
PM3 calculated ionization potential (IP(ev))8.076
PM3 calculated electron affinity (EA(eV))0.106
Number of likely metabolic reactions (#metab)8
Prediction of binding to human serum albumin (QPlogKhsa)-0.818
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)7.713
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)176.811
Number of nitrogen and oxygen atoms (#NandO)12
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P18825ADRA2CAdrenergic receptor alpha-2T01777SEA
P11387TOP1DNA topoisomerase IT09826SEA
P18089ADRA2BAlpha-2b adrenergic receptorT41580SEA
P15692VEGFAVascular endothelial growth factor AT20761SEA
P05230FGF1Acidic fibroblast growth factorT18639SEA
P09038FGF2Basic fibroblast growth factorT31621SEA
P60568IL2Interleukin-2T61698SEA
P17931LGALS3Galectin-3T72038SEA
P14679TYRTyrosinaseT97035SEA
P49862KLK7Kallikrein-7T79155SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T01777DI0166Glaucoma[ICD-11: 9C61]P18825ADRA2C
T01777DI0190Hypertension[ICD-11: BA00-BA04]P18825ADRA2C
T01777DI0196Hypotension[ICD-11: BA20-BA21]P18825ADRA2C
T01777DI0308Obesity[ICD-11: 5B80-5B81]P18825ADRA2C
T01777DI0310Ocular disease[ICD-11: N.A.]P18825ADRA2C
T01777DI0396Substance abuse[ICD-11: 6C40]P18825ADRA2C
T09826DI0046Bacterial infection[ICD-11: 1A00-1C4Z]P11387TOP1
T09826DI0095Colorectal cancer[ICD-11: 2B91]P11387TOP1
T09826DI0238Lung cancer[ICD-11: 2C25]P11387TOP1
T09826DI0321Ovarian cancer[ICD-11: 2C73]P11387TOP1
T09826DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P11387TOP1
T41580DI0396Substance abuse[ICD-11: 6C40]P18089ADRA2B
T20761DI0095Colorectal cancer[ICD-11: 2B91]P15692VEGFA
T20761DI0365Retinopathy[ICD-11: 9B71]P15692VEGFA
T20761DI0430Vascular system developmental anomaly[ICD-11: LA90]P15692VEGFA
T18639DI0081Chronic arterial occlusive disease[ICD-11: BD4Z]P05230FGF1
T18639DI0102Coronary atherosclerosis[ICD-11: BA52]P05230FGF1
T31621DI0005Acne vulgaris[ICD-11: ED80]P09038FGF2
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T72038DI0190Hypertension[ICD-11: BA00-BA04]P17931LGALS3
T72038DI0199Idiopathic interstitial pneumonitis[ICD-11: CB03]P17931LGALS3
T72038DI0252Melanoma[ICD-11: 2C30]P17931LGALS3
T72038DI0302Non-alcoholic fatty liver disease[ICD-11: DB92]P17931LGALS3
T72038DI0351Psoriasis[ICD-11: EA90]P17931LGALS3
T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR

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