6-Hydroxyluteolin 3\'-methyl ether 7-[6\'\'-(3-hydroxy-3-methylglutaryl)glucoside]



Compound IDCDAMM02675
Common name6-Hydroxyluteolin 3\'-methyl ether 7-[6\'\'-(3-hydroxy-3-methylglutaryl)glucoside]
IUPAC name5-[[6-[5,6-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-4-oxochromen-7-yl]oxy-3,4,5-trihydroxyoxan-2-yl]methoxy]-3-hydroxy-3-methyl-5-oxopentanoic acid
Molecular formulaC28H30O16

Experimental data

Retention time9.64
Adduct[M+H]+
Actual mz623.163
Theoretical mz623.16
Error4.05
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.4627

Identifiers and class information

Inchi keyUIKVEVPMKBTFAC-BTWQCSLQNA-N
SmilesO=C(O)CC(O)(C)CC(=O)OCC1OC(OC=2C=C3OC(=CC(=O)C3=C(O)C2O)C=4C=CC(O)=C(OC)C4)C(O)C(O)C1O
SuperclassPhenylpropanoids and polyketides
ClassFlavonoids

Pharmacokinetic properties

Number of descriptor values(#stars)7
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)16
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)622.535
Computed dipole moment(dipole)12.176
Total solvent accessible surface area (SASA)870.372
Hydrophobic component of SASA (FOSA)294.098
Hydrophilic component of SASA (FISA)405.656
Pie component of the SASA (PISA)170.617
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1666.45
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)15.8
Free energy of solvation of dipole (dip^2/V)0.0889611
Index of cohesive interaction in solids (ACxDN^.5/SA)0.044466
Globularity descriptor (glob)0.781008
Predicted polarizability in cubic angstroms (QPpolrz)51.893
Predicted hexadecane/gas partition coefficient (QPlogPC16)19.202
Predicted octanol/gas partition coefficient (QPlogPoct)36.659
Predicted water/gas partition coefficient (QPlogPw)26.555
Predicted octanol/water partition coefficient (QPlogPo/w)0.553
Predicted aqueous solubility (QPlogS)-3.868
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.249
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.082
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.357
Predicted brain/blood partition coefficient (QPlogBB)-4.835
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.118
Predicted skin permeability, log Kp (QPlogKp)-6.859
PM3 calculated ionization potential (IP(ev))8.842
PM3 calculated electron affinity (EA(eV))0.695
Number of likely metabolic reactions (#metab)10
Prediction of binding to human serum albumin (QPlogKhsa)-0.791
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)278.408
Number of nitrogen and oxygen atoms (#NandO)16
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P43166CA7Carbonic anhydrase VIIT37541SEA
P15121AKR1B1Aldose reductaseT26623SwissTargetPrediction
P09917ALOX5Arachidonate 5-lipoxygenaseT00140SEA
P08183ABCB1P-glycoprotein 1T25258SEA
P60568IL2Interleukin-2T61698SEA
Q9NUW8TDP1Tyrosyl-DNA phosphodiesterase 1T33492SEA
Q9UNQ0ABCG2ATP-binding cassette sub-family G member 2T56556SEA
Q9NPH5NOX4NADPH oxidase 4T29741SEA
Q9GZQ4NMUR2Neuromedin-U receptor 2T04210SEA
P47989XDHXanthine dehydrogenaseT40954SEA
Q16678CYP1B1Cytochrome P450 1B1T92521SEA
Q13332PTPRSReceptor-type tyrosine-protein phosphatase ST10147SEA
Q9NZ08ERAP1Endoplasmic reticulum aminopeptidase 1T72849SEA
Q99417MYCBPMYCBP messenger RNAT37298SEA
P16220CREB1Cyclic AMP-responsive element-binding proteinT92098SEA
P30837ALDH1B1Acetaldehyde dehydrogenaseT99641SEA
Q9UK17KCND3Voltage-gated potassium channel Kv4.3T74500SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T26623DI0298Neuropathy[ICD-11: 8C0Z]P15121AKR1B1
T26623DI0366Rheumatoid arthritis[ICD-11: FA20]P15121AKR1B1
T00140DI0037Asthma[ICD-11: CA23]P09917ALOX5
T00140DI0147Filariasis[ICD-11: 1F66]P09917ALOX5
T00140DI0403Thrombocytopenia[ICD-11: 3B64]P09917ALOX5
T25258DI0238Lung cancer[ICD-11: 2C25]P08183ABCB1
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T56556DI0218Irritable bowel syndrome[ICD-11: DD91]Q9UNQ0ABCG2
T56556DI0366Rheumatoid arthritis[ICD-11: FA20]Q9UNQ0ABCG2
T29741DI0146Fibrosis[ICD-11: GA14-GC01]Q9NPH5NOX4
T40954DI0206Inborn purine/pyrimidine/nucleotide metabolism error[ICD-11: 5C55]P47989XDH
T40954DI0266Mineral deficiency[ICD-11: 5B5K]P47989XDH
T10147DI0057Bone paget disease[ICD-11: FB85]Q13332PTPRS
T37298DI0235Liver cancer[ICD-11: 2C12]Q99417MYCBP
T99641DI0396Substance abuse[ICD-11: 6C40]P30837ALDH1B1
T74500DI0004Acidosis[ICD-11: 5C73]Q9UK17KCND3

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