Sanggenon O



Compound IDCDAMM02638
Common nameSanggenon O
IUPAC name4-[6-(2,4-dihydroxybenzoyl)-5-(2,4-dihydroxyphenyl)-3-methylcyclohex-2-en-1-yl]-1,3,5a,8-tetrahydroxy-10a-(3-methylbut-2-enyl)-[1]benzofuro[3,2-b]chromen-11-one
Molecular formulaC40H36O12

Experimental data

Retention time23
Adduct[M+H]+
Actual mz709.222
Theoretical mz709.228
Error8.57
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.9966

Identifiers and class information

Inchi keyLHPRLOAEYJFDCW-NPFGZEBFNA-N
SmilesO=C(C1=CC=C(O)C=C1O)C2C(C=C(C)CC2C3=CC=C(O)C=C3O)C=4C(O)=CC(O)=C5C(=O)C6(OC7=CC(O)=CC=C7C6(O)OC54)CC=C(C)C
SuperclassPhenylpropanoids and polyketides
ClassDiarylheptanoids

Pharmacokinetic properties

Number of descriptor values(#stars)6
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)12
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)708.717
Computed dipole moment(dipole)4.427
Total solvent accessible surface area (SASA)880.419
Hydrophobic component of SASA (FOSA)279.231
Hydrophilic component of SASA (FISA)334.939
Pie component of the SASA (PISA)266.249
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1851.28
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)9.5
Free energy of solvation of dipole (dip^2/V)0.0105866
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0264308
Globularity descriptor (glob)0.828179
Predicted polarizability in cubic angstroms (QPpolrz)62.772
Predicted hexadecane/gas partition coefficient (QPlogPC16)20.58
Predicted octanol/gas partition coefficient (QPlogPoct)36.28
Predicted water/gas partition coefficient (QPlogPw)21.425
Predicted octanol/water partition coefficient (QPlogPo/w)4.113
Predicted aqueous solubility (QPlogS)-6.206
Conformation-independent predicted aqueous solubility (CIQPlogS)-10.996
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.582
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)6.602
Predicted brain/blood partition coefficient (QPlogBB)-3.415
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)2.176
Predicted skin permeability, log Kp (QPlogKp)-5.602
PM3 calculated ionization potential (IP(ev))9.002
PM3 calculated electron affinity (EA(eV))0.505
Number of likely metabolic reactions (#metab)15
Prediction of binding to human serum albumin (QPlogKhsa)0.979
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)26.824
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)220.296
Number of nitrogen and oxygen atoms (#NandO)12
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)3

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P18031PTPN1Protein-tyrosine phosphatase 1BT16347SwissTargetPrediction

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T16347DI0009Acute diabete complication[ICD-11: 5A2Y]P18031PTPN1
T16347DI0062Breast cancer[ICD-11: 2C60-2C6Y]P18031PTPN1
T16347DI0308Obesity[ICD-11: 5B80-5B81]P18031PTPN1
T16347DI0417Type 2 diabetes mellitus[ICD-11: 5A11]P18031PTPN1

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