Bipindogulomethyloside



Compound IDCDAMM02581
Common nameBipindogulomethyloside
IUPAC name3-[5,11,14-trihydroxy-10,13-dimethyl-3-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy-2,3,4,6,7,8,9,11,12,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2H-furan-5-one
Molecular formulaC29H44O10

Experimental data

Retention time3.73
Adduct[M+H]+
Actual mz553.299
Theoretical mz553.3
Error2.13
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.3307

Identifiers and class information

Inchi keyWRORFDCUNLGVJF-UHFFFAOYNA-N
SmilesO=C1OCC(=C1)C2CCC3(O)C4CCC5(O)CC(OC6OC(C)C(O)C(O)C6O)CCC5(C)C4C(O)CC23C
SuperclassLipids and lipid-like molecules
ClassSteroids and steroid derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)8
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)552.661
Computed dipole moment(dipole)7.648
Total solvent accessible surface area (SASA)803.608
Hydrophobic component of SASA (FOSA)553.297
Hydrophilic component of SASA (FISA)221.265
Pie component of the SASA (PISA)29.046
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1582.86
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)14.7
Free energy of solvation of dipole (dip^2/V)0.0369541
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0448073
Globularity descriptor (glob)0.817366
Predicted polarizability in cubic angstroms (QPpolrz)52.333
Predicted hexadecane/gas partition coefficient (QPlogPC16)15.938
Predicted octanol/gas partition coefficient (QPlogPoct)34.78
Predicted water/gas partition coefficient (QPlogPw)24.858
Predicted octanol/water partition coefficient (QPlogPo/w)1.154
Predicted aqueous solubility (QPlogS)-4.516
Conformation-independent predicted aqueous solubility (CIQPlogS)-4.542
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.626
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)79.003
Predicted brain/blood partition coefficient (QPlogBB)-2.127
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)31.83
Predicted skin permeability, log Kp (QPlogKp)-4.727
PM3 calculated ionization potential (IP(ev))10.336
PM3 calculated electron affinity (EA(eV))0.545
Number of likely metabolic reactions (#metab)8
Prediction of binding to human serum albumin (QPlogKhsa)-0.224
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)41.748
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)165.128
Number of nitrogen and oxygen atoms (#NandO)10
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P51449RORCNuclear receptor ROR-gammaT25307SwissTargetPrediction
P40763STAT3Signal transducer and activator of transcription 3T29130SwissTargetPrediction
P05023ATP1A1Sodium/potassium-transporting ATPase alpha-1 chainT40800SwissTargetPrediction and SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T25307DI0042Autoimmune disease[ICD-11: 4A40-4A45]P51449RORC
T25307DI0107Crohn disease[ICD-11: DD70]P51449RORC
T25307DI0238Lung cancer[ICD-11: 2C25]P51449RORC
T25307DI0275Multiple sclerosis[ICD-11: 8A40]P51449RORC
T25307DI0351Psoriasis[ICD-11: EA90]P51449RORC
T25307DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P51449RORC
T29130DI0351Psoriasis[ICD-11: EA90]P40763STAT3
T40800DI0068Cardiac arrhythmia[ICD-11: BC9Z]P05023ATP1A1
T40800DI0086Chronic obstructive pulmonary disease[ICD-11: CA22]P05023ATP1A1
T40800DI0101Corneal disease[ICD-11: 9A76-9A78]P05023ATP1A1
T40800DI0175Heart failure[ICD-11: BD10-BD1Z]P05023ATP1A1
T40800DI0186Hyperhidrosis[ICD-11: EE00]P05023ATP1A1
T40800DI0243Malaria[ICD-11: 1F40-1F45]P05023ATP1A1
T40800DI0397Supraventricular tachyarrhythmia[ICD-11: BC81]P05023ATP1A1

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