Digitalin



Compound IDCDAMM02533
Common nameDigitalin
IUPAC name3-[14,16-dihydroxy-3-[3-hydroxy-4-methoxy-6-methyl-5-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one
Molecular formulaC36H56O14

Experimental data

Retention time10.34
Adduct[M+H]+
Actual mz713.381
Theoretical mz713.374
Error10.13
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.4067

Identifiers and class information

Inchi keyCKNOLMVLQUPVMU-HUCHKWPBNA-N
SmilesO=C1OCC(=C1)C2C(O)CC3(O)C4CCC5CC(OC6OC(C)C(OC7OC(CO)C(O)C(O)C7O)C(OC)C6O)CCC5(C)C4CCC23C
SuperclassLipids and lipid-like molecules
ClassSteroids and steroid derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)8
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)712.83
Computed dipole moment(dipole)7.55
Total solvent accessible surface area (SASA)967.821
Hydrophobic component of SASA (FOSA)636.255
Hydrophilic component of SASA (FISA)306.857
Pie component of the SASA (PISA)24.71
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1965.51
Number of hydrogen bond donors (donorHB)7
Number of hydrogen bond acceptors (accptHB)22.45
Free energy of solvation of dipole (dip^2/V)0.0289977
Index of cohesive interaction in solids (ACxDN^.5/SA)0.061372
Globularity descriptor (glob)0.784068
Predicted polarizability in cubic angstroms (QPpolrz)64.394
Predicted hexadecane/gas partition coefficient (QPlogPC16)20.241
Predicted octanol/gas partition coefficient (QPlogPoct)44.792
Predicted water/gas partition coefficient (QPlogPw)33.801
Predicted octanol/water partition coefficient (QPlogPo/w)-0.287
Predicted aqueous solubility (QPlogS)-4.01
Conformation-independent predicted aqueous solubility (CIQPlogS)-4.624
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.144
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)12.189
Predicted brain/blood partition coefficient (QPlogBB)-3.548
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)4.222
Predicted skin permeability, log Kp (QPlogKp)-5.84
PM3 calculated ionization potential (IP(ev))10.557
PM3 calculated electron affinity (EA(eV))0.54
Number of likely metabolic reactions (#metab)9
Prediction of binding to human serum albumin (QPlogKhsa)-0.865
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)5.828
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)217.949
Number of nitrogen and oxygen atoms (#NandO)14
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P05230FGF1Acidic fibroblast growth factorT18639SEA
P05023ATP1A1Sodium/potassium-transporting ATPase alpha-1 chainT40800SEA
P60568IL2Interleukin-2T61698SEA
P04746AMY2APancreatic alpha-amylaseT86918SEA
Q99417MYCBPMYCBP messenger RNAT37298SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T18639DI0081Chronic arterial occlusive disease[ICD-11: BD4Z]P05230FGF1
T18639DI0102Coronary atherosclerosis[ICD-11: BA52]P05230FGF1
T40800DI0068Cardiac arrhythmia[ICD-11: BC9Z]P05023ATP1A1
T40800DI0086Chronic obstructive pulmonary disease[ICD-11: CA22]P05023ATP1A1
T40800DI0101Corneal disease[ICD-11: 9A76-9A78]P05023ATP1A1
T40800DI0175Heart failure[ICD-11: BD10-BD1Z]P05023ATP1A1
T40800DI0186Hyperhidrosis[ICD-11: EE00]P05023ATP1A1
T40800DI0243Malaria[ICD-11: 1F40-1F45]P05023ATP1A1
T40800DI0397Supraventricular tachyarrhythmia[ICD-11: BC81]P05023ATP1A1
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T86918DI0110Cystic fibrosis[ICD-11: CA25]P04746AMY2A
T86918DI0328Pancreatic malfunction[ICD-11: DC30-DC3Z]P04746AMY2A
T37298DI0235Liver cancer[ICD-11: 2C12]Q99417MYCBP

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