Rediocide B



Compound IDCDAMM02508
Common nameRediocide B
IUPAC name[3,4,16,17-tetrahydroxy-15-(hydroxymethyl)-3,6,20-trimethyl-23-oxo-9-phenyl-8,10,14,22,34-pentaoxaoctacyclo[27.2.2.15,9.04,11.07,12.07,18.013,15.017,21]tetratriaconta-24,26-dien-28-yl] 2-methylbutanoate
Molecular formulaC44H58O13

Experimental data

Retention time4.5
Adduct[M+H]+
Actual mz795.395
Theoretical mz795.395
Error0.35
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.6205

Identifiers and class information

Inchi keyDHFROJQSOJWWFQ-YCRUPXPONA-N
SmilesO=C1OC2C(C)CC3C2(O)C(O)C4(OC4C5C6OC7(OC(C(C)C53O7)C6(O)C(O)(C)CC8CCC(CC8)C(OC(=O)C(C)CC)C=CC=C1)C=9C=CC=CC9)CO
SuperclassPhenylpropanoids and polyketides
ClassMacrolides and analogues

Pharmacokinetic properties

Number of descriptor values(#stars)5
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)18
Number of reactive functional groups (#rtvFG)4
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)794.934
Computed dipole moment(dipole)7.489
Total solvent accessible surface area (SASA)956.516
Hydrophobic component of SASA (FOSA)576.916
Hydrophilic component of SASA (FISA)179.944
Pie component of the SASA (PISA)199.657
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)2092.57
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)13.65
Free energy of solvation of dipole (dip^2/V)0.0267985
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0285411
Globularity descriptor (glob)0.827166
Predicted polarizability in cubic angstroms (QPpolrz)67.94
Predicted hexadecane/gas partition coefficient (QPlogPC16)20.476
Predicted octanol/gas partition coefficient (QPlogPoct)36.708
Predicted water/gas partition coefficient (QPlogPw)19.936
Predicted octanol/water partition coefficient (QPlogPo/w)5.354
Predicted aqueous solubility (QPlogS)-5.512
Conformation-independent predicted aqueous solubility (CIQPlogS)-9.9
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.281
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)194.757
Predicted brain/blood partition coefficient (QPlogBB)-2.275
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)84.407
Predicted skin permeability, log Kp (QPlogKp)-2.404
PM3 calculated ionization potential (IP(ev))9.607
PM3 calculated electron affinity (EA(eV))0.916
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)0.776
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)60.399
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)178.301
Number of nitrogen and oxygen atoms (#NandO)13
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P35368ADRA1BAlpha-1b adrenergic receptorT29500SwissTargetPrediction
P35348ADRA1AAlpha-1a adrenergic receptorT92609SwissTargetPrediction
P47871GCGRGlucagon receptorT60182SwissTargetPrediction
P51684CCR6C-C chemokine receptor type 6T63165SwissTargetPrediction and SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T29500DI0040Attention deficit hyperactivity disorder[ICD-11: 6A05]P35368ADRA1B
T29500DI0190Hypertension[ICD-11: BA00-BA04]P35368ADRA1B
T29500DI0256Mental/behavioural/neurodevelopmental disorder[ICD-11: 6E20-6E8Z]P35368ADRA1B
T29500DI0308Obesity[ICD-11: 5B80-5B81]P35368ADRA1B
T29500DI0324Pain[ICD-11: MG30-MG3Z]P35368ADRA1B
T92609DI0190Hypertension[ICD-11: BA00-BA04]P35348ADRA1A
T92609DI0348Prostate hyperplasia[ICD-11: GA90]P35348ADRA1A
T60182DI0193Hypo-glycaemia[ICD-11: 5A41]P47871GCGR
T63165DI0207Indeterminate colitis[ICD-11: DD72]P51684CCR6

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