Shatavarin X



Compound IDCDAMM02504
Common nameShatavarin X
IUPAC name[3,4,5-trihydroxy-6-[4-hydroxy-2-(hydroxymethyl)-6-(5\',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icosane-6,2\'-oxane]-16-yl)oxy-5-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxyoxan-3-yl]oxyoxan-2-yl]methyl acetate
Molecular formulaC47H76O18

Experimental data

Retention time4.5
Adduct[M+H]2+
Actual mz464.755
Theoretical mz464.755
Error0.73
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.4397

Identifiers and class information

Inchi keyQPCXNOOIVSKVLM-TWLHICKYNA-N
SmilesO=C(OCC1OC(OC2C(O)C(OC3OC(C)C(O)C(O)C3O)C(OC4CCC5(C)C(CCC6C5CCC7(C)C6CC8OC9(OCC(C)CC9)C(C)C87)C4)OC2CO)C(O)C(O)C1O)C
SuperclassLipids and lipid-like molecules
ClassSteroids and steroid derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)13
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)17
Number of reactive functional groups (#rtvFG)5
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)929.107
Computed dipole moment(dipole)4.35
Total solvent accessible surface area (SASA)1246.03
Hydrophobic component of SASA (FOSA)931.117
Hydrophilic component of SASA (FISA)314.914
Pie component of the SASA (PISA)0
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)2573.3
Number of hydrogen bond donors (donorHB)8
Number of hydrogen bond acceptors (accptHB)27.3
Free energy of solvation of dipole (dip^2/V)0.0073519
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0619697
Globularity descriptor (glob)0.728837
Predicted polarizability in cubic angstroms (QPpolrz)85.914
Predicted hexadecane/gas partition coefficient (QPlogPC16)26.309
Predicted octanol/gas partition coefficient (QPlogPoct)55.899
Predicted water/gas partition coefficient (QPlogPw)39.717
Predicted octanol/water partition coefficient (QPlogPo/w)0.958
Predicted aqueous solubility (QPlogS)-5.749
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.648
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.92
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)10.223
Predicted brain/blood partition coefficient (QPlogBB)-4.413
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)3.491
Predicted skin permeability, log Kp (QPlogKp)-5.691
PM3 calculated ionization potential (IP(ev))10.394
PM3 calculated electron affinity (EA(eV))-0.861
Number of likely metabolic reactions (#metab)8
Prediction of binding to human serum albumin (QPlogKhsa)-0.727
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)11.751
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)262.739
Number of nitrogen and oxygen atoms (#NandO)18
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)3

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P49810PSEN2Gamma-secretaseT99204SwissTargetPrediction
P05230FGF1Acidic fibroblast growth factorT18639SEA
P60568IL2Interleukin-2T61698SEA
P04746AMY2APancreatic alpha-amylaseT86918SEA
O15399GRIN2DGlutamate [NMDA] receptor subunit epsilon 4T56588SEA
Q14957GRIN2CGlutamate receptor ionotropic NMDA 2CT72595SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T99204DI0320Osteoarthritis[ICD-11: FA00-FA05]P49810PSEN2
T99204DI0380Shoulder lesion[ICD-11: FB53]P49810PSEN2
T99204DI0390Soft tissue disorder[ICD-11: FB56]P49810PSEN2
T18639DI0081Chronic arterial occlusive disease[ICD-11: BD4Z]P05230FGF1
T18639DI0102Coronary atherosclerosis[ICD-11: BA52]P05230FGF1
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T86918DI0110Cystic fibrosis[ICD-11: CA25]P04746AMY2A
T86918DI0328Pancreatic malfunction[ICD-11: DC30-DC3Z]P04746AMY2A
T56588DI0296Neurodegenerative disorder[ICD-11: 8A20-8A23]O15399GRIN2D
T72595DI0296Neurodegenerative disorder[ICD-11: 8A20-8A23]Q14957GRIN2C

Copyright © 2025