(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one



Compound IDCDAMM02454
Common name(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one
IUPAC name4-(1,2,4-trihydroxy-2,6,6-trimethylcyclohexyl)but-3-en-2-one
Molecular formulaC13H22O4

Experimental data

Retention time8.55
Adduct[M+H]+
Actual mz243.159
Theoretical mz243.159
Error1.96
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.5897

Identifiers and class information

Inchi keyQASOACWKTAXFSE-AATRIKPKNA-N
SmilesO=C(C=CC1(O)C(O)(C)CC(O)CC1(C)C)C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)5
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-1
Molecular weight (mol_MW)242.314
Computed dipole moment(dipole)7.416
Total solvent accessible surface area (SASA)479.601
Hydrophobic component of SASA (FOSA)357.977
Hydrophilic component of SASA (FISA)120.696
Pie component of the SASA (PISA)0.927
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)838.156
Number of hydrogen bond donors (donorHB)3
Number of hydrogen bond acceptors (accptHB)5.2
Free energy of solvation of dipole (dip^2/V)0.0656174
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0187795
Globularity descriptor (glob)0.8964
Predicted polarizability in cubic angstroms (QPpolrz)24.187
Predicted hexadecane/gas partition coefficient (QPlogPC16)7.705
Predicted octanol/gas partition coefficient (QPlogPoct)15.386
Predicted water/gas partition coefficient (QPlogPw)10.113
Predicted octanol/water partition coefficient (QPlogPo/w)1.33
Predicted aqueous solubility (QPlogS)-2.441
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.072
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.213
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)710.136
Predicted brain/blood partition coefficient (QPlogBB)-0.739
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)341.718
Predicted skin permeability, log Kp (QPlogKp)-3.261
PM3 calculated ionization potential (IP(ev))10.118
PM3 calculated electron affinity (EA(eV))-0.033
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-0.292
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)85.766
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)78.179
Number of nitrogen and oxygen atoms (#NandO)4
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
Q9NS86LANCL2LanC-like protein 2T63207SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T63207DI0366Rheumatoid arthritis[ICD-11: FA20]Q9NS86LANCL2
T63207DI0419Ulcerative colitis[ICD-11: DD71]Q9NS86LANCL2

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