Dipsanoside G



Compound IDCDAMM02449
Common nameDipsanoside G
IUPAC namemethyl 6-[4-(2,2-dimethoxyethyl)-3-ethenyl-2-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-3,4-dihydro-2H-pyran-5-carbonyl]oxy-3-hydroxy-7-methyl-1,3,4,4a,5,6,7,7a-octahydrocyclopenta[c]pyran-4-carboxylate
Molecular formulaC29H44O15

Experimental data

Retention time4.5
Adduct[2M+H]+
Actual mz1265.54
Theoretical mz1265.54
Error1.01
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.2699

Identifiers and class information

Inchi keyHAOOAXFIOQPXIQ-JXNMOCNZNA-N
SmilesO=C(OC1CC2C(C(=O)OC)C(O)OCC2C1C)C3=COC(OC4OC(CO)C(O)C(O)C4O)C(C=C)C3CC(OC)OC
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)6
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)16
Number of reactive functional groups (#rtvFG)6
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)632.658
Computed dipole moment(dipole)10.073
Total solvent accessible surface area (SASA)942.724
Hydrophobic component of SASA (FOSA)647.892
Hydrophilic component of SASA (FISA)252.956
Pie component of the SASA (PISA)41.875
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1834.58
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)21.7
Free energy of solvation of dipole (dip^2/V)0.055307
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0460368
Globularity descriptor (glob)0.768784
Predicted polarizability in cubic angstroms (QPpolrz)57.392
Predicted hexadecane/gas partition coefficient (QPlogPC16)18.356
Predicted octanol/gas partition coefficient (QPlogPoct)37.436
Predicted water/gas partition coefficient (QPlogPw)27.696
Predicted octanol/water partition coefficient (QPlogPo/w)-0.163
Predicted aqueous solubility (QPlogS)-3.11
Conformation-independent predicted aqueous solubility (CIQPlogS)-3.525
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.473
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)39.547
Predicted brain/blood partition coefficient (QPlogBB)-3.254
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)15.066
Predicted skin permeability, log Kp (QPlogKp)-4.498
PM3 calculated ionization potential (IP(ev))9.709
PM3 calculated electron affinity (EA(eV))-0.232
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)-1.282
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)28.659
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)211.898
Number of nitrogen and oxygen atoms (#NandO)15
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P15692VEGFAVascular endothelial growth factor AT20761SEA
P05230FGF1Acidic fibroblast growth factorT18639SEA
P09038FGF2Basic fibroblast growth factorT31621SEA
P60568IL2Interleukin-2T61698SEA
P14679TYRTyrosinaseT97035SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T20761DI0095Colorectal cancer[ICD-11: 2B91]P15692VEGFA
T20761DI0365Retinopathy[ICD-11: 9B71]P15692VEGFA
T20761DI0430Vascular system developmental anomaly[ICD-11: LA90]P15692VEGFA
T18639DI0081Chronic arterial occlusive disease[ICD-11: BD4Z]P05230FGF1
T18639DI0102Coronary atherosclerosis[ICD-11: BA52]P05230FGF1
T31621DI0005Acne vulgaris[ICD-11: ED80]P09038FGF2
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR

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