Sanggenon G



Compound IDCDAMM02426
Common nameSanggenon G
IUPAC name6-[6-(2,4-dihydroxybenzoyl)-5-(2,4-dihydroxyphenyl)-3-(4-methylpent-3-enyl)cyclohex-2-en-1-yl]-2-(2,4-dihydroxyphenyl)-5,7-dihydroxy-2,3-dihydrochromen-4-one
Molecular formulaC40H38O11

Experimental data

Retention time4.86
Adduct[M+H]+
Actual mz695.25
Theoretical mz695.248
Error1.76
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.0792

Identifiers and class information

Inchi keyVYCKCQBOVSSJSK-JGCQYDHQNA-N
SmilesO=C1C2=C(O)C(=C(O)C=C2OC(C3=CC=C(O)C=C3O)C1)C4C=C(CCC=C(C)C)CC(C5=CC=C(O)C=C5O)C4C(=O)C6=CC=C(O)C=C6O
SuperclassPhenylpropanoids and polyketides
ClassFlavonoids

Pharmacokinetic properties

Number of descriptor values(#stars)7
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)694.734
Computed dipole moment(dipole)6.304
Total solvent accessible surface area (SASA)966.266
Hydrophobic component of SASA (FOSA)293.295
Hydrophilic component of SASA (FISA)349.893
Pie component of the SASA (PISA)323.079
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1931.32
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)8.75
Free energy of solvation of dipole (dip^2/V)0.0205748
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0221813
Globularity descriptor (glob)0.776196
Predicted polarizability in cubic angstroms (QPpolrz)65.876
Predicted hexadecane/gas partition coefficient (QPlogPC16)22.223
Predicted octanol/gas partition coefficient (QPlogPoct)36.978
Predicted water/gas partition coefficient (QPlogPw)21.161
Predicted octanol/water partition coefficient (QPlogPo/w)4.775
Predicted aqueous solubility (QPlogS)-7.638
Conformation-independent predicted aqueous solubility (CIQPlogS)-10.938
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-6.694
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)4.763
Predicted brain/blood partition coefficient (QPlogBB)-4.092
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)1.529
Predicted skin permeability, log Kp (QPlogKp)-5.582
PM3 calculated ionization potential (IP(ev))8.92
PM3 calculated electron affinity (EA(eV))0.615
Number of likely metabolic reactions (#metab)18
Prediction of binding to human serum albumin (QPlogKhsa)1.185
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)28.161
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)218.379
Number of nitrogen and oxygen atoms (#NandO)11
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)3

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P11926ODC1Ornithine decarboxylaseT60366SEA
P18031PTPN1Protein-tyrosine phosphatase 1BT16347SwissTargetPrediction
P14679TYRTyrosinaseT97035SEA
Q16678CYP1B1Cytochrome P450 1B1T92521SEA
P16152CBR1Carbonyl reductase [NADPH] 1T70518SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T60366DI0020African trypanosomiasis[ICD-11: 1F51]P11926ODC1
T16347DI0009Acute diabete complication[ICD-11: 5A2Y]P18031PTPN1
T16347DI0062Breast cancer[ICD-11: 2C60-2C6Y]P18031PTPN1
T16347DI0308Obesity[ICD-11: 5B80-5B81]P18031PTPN1
T16347DI0417Type 2 diabetes mellitus[ICD-11: 5A11]P18031PTPN1
T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR
T70518DI0037Asthma[ICD-11: CA23]P16152CBR1

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