Neocnidilide



Compound IDCDAMM02387
Common nameNeocnidilide
IUPAC name3-butyl-3a,4,5,6-tetrahydro-3H-2-benzofuran-1-one
Molecular formulaC12H18O2

Experimental data

Retention time9.21
Adduct[M+H]+
Actual mz195.138
Theoretical mz195.138
Error0.39
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.6165

Identifiers and class information

Inchi keyUPJFTVFLSIQQAV-UHFFFAOYNA-N
SmilesO=C1OC(CCCC)C2C1=CCCC2
SuperclassOrganoheterocyclic compounds
ClassIsobenzofurans

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)3
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)0
Molecular weight (mol_MW)194.273
Computed dipole moment(dipole)6.337
Total solvent accessible surface area (SASA)448.368
Hydrophobic component of SASA (FOSA)354.18
Hydrophilic component of SASA (FISA)61.714
Pie component of the SASA (PISA)32.474
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)746.313
Number of hydrogen bond donors (donorHB)0
Number of hydrogen bond acceptors (accptHB)3
Free energy of solvation of dipole (dip^2/V)0.0537996
Index of cohesive interaction in solids (ACxDN^.5/SA)0
Globularity descriptor (glob)0.887452
Predicted polarizability in cubic angstroms (QPpolrz)22.097
Predicted hexadecane/gas partition coefficient (QPlogPC16)5.857
Predicted octanol/gas partition coefficient (QPlogPoct)8.724
Predicted water/gas partition coefficient (QPlogPw)3.732
Predicted octanol/water partition coefficient (QPlogPo/w)2.314
Predicted aqueous solubility (QPlogS)-2.655
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.023
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.508
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)2574.36
Predicted brain/blood partition coefficient (QPlogBB)-0.14
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)1374.79
Predicted skin permeability, log Kp (QPlogKp)-2.254
PM3 calculated ionization potential (IP(ev))10.248
PM3 calculated electron affinity (EA(eV))0.205
Number of likely metabolic reactions (#metab)2
Prediction of binding to human serum albumin (QPlogKhsa)-0.145
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)40.118
Number of nitrogen and oxygen atoms (#NandO)2
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P11511CYP19A1Cytochrome P450 19A1T13260SwissTargetPrediction
P06746POLBDNA polymerase beta (by homology)T06958SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T13260DI0062Breast cancer[ICD-11: 2C60-2C6Y]P11511CYP19A1
T13260DI0108Cushing syndrome[ICD-11: 5A70]P11511CYP19A1
T06958DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P06746POLB

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