Semperviramidine



Compound IDCDAMM02302
Common nameSemperviramidine
IUPAC name[6-benzamido-15-[1-(dimethylamino)ethyl]-7-(hydroxymethyl)-7,12,16-trimethyl-14-pentacyclo[9.7.0.01,3.03,8.012,16]octadecanyl] acetate
Molecular formulaC35H52N2O4

Experimental data

Retention time9.05
Adduct[M+H]+
Actual mz565.399
Theoretical mz565.4
Error2.26
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.2935

Identifiers and class information

Inchi keyPZUXCVGZGCVETM-NWJRNKATNA-N
SmilesO=C(OC1CC2(C)C3CCC4C(C)(CO)C(NC(=O)C=5C=CC=CC5)CCC64CC36CCC2(C)C1C(N(C)C)C)C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)7
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)1
Molecular weight (mol_MW)564.807
Computed dipole moment(dipole)4.821
Total solvent accessible surface area (SASA)852.207
Hydrophobic component of SASA (FOSA)567.653
Hydrophilic component of SASA (FISA)94.604
Pie component of the SASA (PISA)189.95
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1727.98
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)8.2
Free energy of solvation of dipole (dip^2/V)0.013451
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0136077
Globularity descriptor (glob)0.817172
Predicted polarizability in cubic angstroms (QPpolrz)60.319
Predicted hexadecane/gas partition coefficient (QPlogPC16)16.501
Predicted octanol/gas partition coefficient (QPlogPoct)27.667
Predicted water/gas partition coefficient (QPlogPw)13.168
Predicted octanol/water partition coefficient (QPlogPo/w)5.62
Predicted aqueous solubility (QPlogS)-6.271
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.4
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-6.122
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)313.09
Predicted brain/blood partition coefficient (QPlogBB)-0.404
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)155.994
Predicted skin permeability, log Kp (QPlogKp)-3.984
PM3 calculated ionization potential (IP(ev))8.96
PM3 calculated electron affinity (EA(eV))0.218
Number of likely metabolic reactions (#metab)2
Prediction of binding to human serum albumin (QPlogKhsa)1.364
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)78.6
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)85.787
Number of nitrogen and oxygen atoms (#NandO)6
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P08183ABCB1P-glycoprotein 1T25258SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T25258DI0238Lung cancer[ICD-11: 2C25]P08183ABCB1

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