Xylogranatin M



Compound IDCDAMM02295
Common nameXylogranatin M
IUPAC namemethyl 3-[4-[4-acetyloxy-6-(2-methoxy-2-oxoethyl)-5,5,7-trimethyl-6,7-dihydro-4H-1-benzofuran-2-yl]-2-(furan-3-yl)-3-methyl-6-oxo-2H-pyran-3-yl]propanoate
Molecular formulaC30H36O10

Experimental data

Retention time8.49
Adduct[M+H]+
Actual mz557.238
Theoretical mz557.238
Error0.5
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.8581

Identifiers and class information

Inchi keyJYIHRWVZYRQUSA-KOUGZXHTNA-N
SmilesO=C1OC(C2=COC=C2)C(C(=C1)C=3OC4=C(C3)C(OC(=O)C)C(C)(C)C(CC(=O)OC)C4C)(C)CCC(=O)OC
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)6
Number of reactive functional groups (#rtvFG)4
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)556.608
Computed dipole moment(dipole)7.971
Total solvent accessible surface area (SASA)890.312
Hydrophobic component of SASA (FOSA)556.42
Hydrophilic component of SASA (FISA)196.617
Pie component of the SASA (PISA)137.275
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1694.57
Number of hydrogen bond donors (donorHB)0
Number of hydrogen bond acceptors (accptHB)10
Free energy of solvation of dipole (dip^2/V)0.0374959
Index of cohesive interaction in solids (ACxDN^.5/SA)0
Globularity descriptor (glob)0.772082
Predicted polarizability in cubic angstroms (QPpolrz)59.121
Predicted hexadecane/gas partition coefficient (QPlogPC16)16.458
Predicted octanol/gas partition coefficient (QPlogPoct)25.834
Predicted water/gas partition coefficient (QPlogPw)12.659
Predicted octanol/water partition coefficient (QPlogPo/w)4.28
Predicted aqueous solubility (QPlogS)-6.876
Conformation-independent predicted aqueous solubility (CIQPlogS)-7.065
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.875
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)135.326
Predicted brain/blood partition coefficient (QPlogBB)-1.997
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)56.948
Predicted skin permeability, log Kp (QPlogKp)-4.084
PM3 calculated ionization potential (IP(ev))9.221
PM3 calculated electron affinity (EA(eV))0.897
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)0.608
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)77.198
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)157.889
Number of nitrogen and oxygen atoms (#NandO)10
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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