Shatavarin VII



Compound IDCDAMM02292
Common nameShatavarin VII
IUPAC name2-[4-hydroxy-2-(hydroxymethyl)-5-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-6-(7,9,13-trimethyl-5\'-methylidenespiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icosane-6,2\'-oxane]-16-yl)oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol
Molecular formulaC45H72O17

Experimental data

Retention time7.18
Adduct[M+Na]+
Actual mz907.467
Theoretical mz907.466
Error0.42
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.6826

Identifiers and class information

Inchi keyGTHFQEMYVCDXKR-FIXQZTEQNA-N
SmilesOCC1OC(OC2C(O)C(OC3OC(C)C(O)C(O)C3O)C(OC2OC4CCC5(C)C(CCC6C5CCC7(C)C6CC8OC9(OCC(=C)CC9)C(C)C87)C4)CO)C(O)C(O)C1O
SuperclassLipids and lipid-like molecules
ClassSteroids and steroid derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)14
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)17
Number of reactive functional groups (#rtvFG)4
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)885.054
Computed dipole moment(dipole)2.311
Total solvent accessible surface area (SASA)1147.13
Hydrophobic component of SASA (FOSA)842.539
Hydrophilic component of SASA (FISA)268.731
Pie component of the SASA (PISA)35.859
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)2418.35
Number of hydrogen bond donors (donorHB)9
Number of hydrogen bond acceptors (accptHB)27
Free energy of solvation of dipole (dip^2/V)0.002208
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0706111
Globularity descriptor (glob)0.759566
Predicted polarizability in cubic angstroms (QPpolrz)80.055
Predicted hexadecane/gas partition coefficient (QPlogPC16)24.568
Predicted octanol/gas partition coefficient (QPlogPoct)55.054
Predicted water/gas partition coefficient (QPlogPw)40.578
Predicted octanol/water partition coefficient (QPlogPo/w)0.539
Predicted aqueous solubility (QPlogS)-4.494
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.916
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.593
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)28.024
Predicted brain/blood partition coefficient (QPlogBB)-3.566
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)10.383
Predicted skin permeability, log Kp (QPlogKp)-4.714
PM3 calculated ionization potential (IP(ev))9.938
PM3 calculated electron affinity (EA(eV))-0.971
Number of likely metabolic reactions (#metab)11
Prediction of binding to human serum albumin (QPlogKhsa)-0.906
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)17.132
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)245.567
Number of nitrogen and oxygen atoms (#NandO)17
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P05230FGF1Acidic fibroblast growth factorT18639SEA
P05023ATP1A1Sodium/potassium-transporting ATPase alpha-1 chainT40800SEA
P60568IL2Interleukin-2T61698SEA
P04746AMY2APancreatic alpha-amylaseT86918SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T18639DI0081Chronic arterial occlusive disease[ICD-11: BD4Z]P05230FGF1
T18639DI0102Coronary atherosclerosis[ICD-11: BA52]P05230FGF1
T40800DI0068Cardiac arrhythmia[ICD-11: BC9Z]P05023ATP1A1
T40800DI0086Chronic obstructive pulmonary disease[ICD-11: CA22]P05023ATP1A1
T40800DI0101Corneal disease[ICD-11: 9A76-9A78]P05023ATP1A1
T40800DI0175Heart failure[ICD-11: BD10-BD1Z]P05023ATP1A1
T40800DI0186Hyperhidrosis[ICD-11: EE00]P05023ATP1A1
T40800DI0243Malaria[ICD-11: 1F40-1F45]P05023ATP1A1
T40800DI0397Supraventricular tachyarrhythmia[ICD-11: BC81]P05023ATP1A1
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T86918DI0110Cystic fibrosis[ICD-11: CA25]P04746AMY2A
T86918DI0328Pancreatic malfunction[ICD-11: DC30-DC3Z]P04746AMY2A

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