Bn-NCC-2



Compound IDCDAMM02284
Common nameBn-NCC-2
IUPAC name6-[3-(2-carboxyethyl)-5-[(4-ethenyl-3-methyl-5-oxo-1,2-dihydropyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-2-yl]-2-[[5-formyl-4-methyl-3-[2-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyethyl]-1H-pyrrol-2-yl]methyl]-3-methyl-4-oxo-5,6-dihydro-1H-cyclopenta[b]pyrrole-5-carboxylic acid
Molecular formulaC40H48N4O13

Experimental data

Retention time15.28
Adduct[M+H]+
Actual mz793.33
Theoretical mz793.329
Error0.53
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.2474

Identifiers and class information

Inchi keyKHUYAPOQDBVQNV-UHFFFAOYNA-N
SmilesO=CC=1NC(=C(C1C)CCOC2OC(CO)C(O)C(O)C2O)CC=3NC4=C(C(=O)C(C(=O)O)C4C=5NC(=C(C5CCC(=O)O)C)CC6NC(=O)C(C=C)=C6C)C3C
SuperclassOrganoheterocyclic compounds
ClassTetrapyrroles and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)13
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)2
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)19
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)792.838
Computed dipole moment(dipole)17.671
Total solvent accessible surface area (SASA)1037.03
Hydrophobic component of SASA (FOSA)546.116
Hydrophilic component of SASA (FISA)433.281
Pie component of the SASA (PISA)57.629
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)2204.51
Number of hydrogen bond donors (donorHB)9
Number of hydrogen bond acceptors (accptHB)19.7
Free energy of solvation of dipole (dip^2/V)0.141644
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0569899
Globularity descriptor (glob)0.789921
Predicted polarizability in cubic angstroms (QPpolrz)70.421
Predicted hexadecane/gas partition coefficient (QPlogPC16)23.694
Predicted octanol/gas partition coefficient (QPlogPoct)50.523
Predicted water/gas partition coefficient (QPlogPw)33.949
Predicted octanol/water partition coefficient (QPlogPo/w)2.013
Predicted aqueous solubility (QPlogS)-4.543
Conformation-independent predicted aqueous solubility (CIQPlogS)-7.967
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-1.591
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.049
Predicted brain/blood partition coefficient (QPlogBB)-5.211
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.018
Predicted skin permeability, log Kp (QPlogKp)-7.478
PM3 calculated ionization potential (IP(ev))9.435
PM3 calculated electron affinity (EA(eV))0.94
Number of likely metabolic reactions (#metab)16
Prediction of binding to human serum albumin (QPlogKhsa)-0.572
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)329.641
Number of nitrogen and oxygen atoms (#NandO)17
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
Q92887CMOATMultidrug resistance-associated protein 2T61792SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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