Wikstroelide A



Compound IDCDAMM02249
Common nameWikstroelide A
IUPAC name[6,7-dihydroxy-8-(hydroxymethyl)-4,18-dimethyl-5-oxo-16-prop-1-en-2-yl-14-trideca-1,3-dienyl-9,13,15,19-tetraoxahexacyclo[12.4.1.01,11.02,6.08,10.012,16]nonadec-3-en-17-yl] acetate
Molecular formulaC36H50O10

Experimental data

Retention time12.73
Adduct[M+H]+
Actual mz643.347
Theoretical mz643.347
Error0.74
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.3526

Identifiers and class information

Inchi keyADIURPPZKNTYEV-CZTBCWKBNA-N
SmilesO=C(OC1C(C)C23OC4(OC(C3C5OC5(CO)C(O)C6(O)C(=O)C(=CC62)C)C1(O4)C(=C)C)C=CC=CCCCCCCCCC)C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)3
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)16
Number of reactive functional groups (#rtvFG)3
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)642.785
Computed dipole moment(dipole)8.387
Total solvent accessible surface area (SASA)967.39
Hydrophobic component of SASA (FOSA)752.173
Hydrophilic component of SASA (FISA)153.458
Pie component of the SASA (PISA)61.758
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1934.92
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)11.15
Free energy of solvation of dipole (dip^2/V)0.0363507
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0115259
Globularity descriptor (glob)0.776257
Predicted polarizability in cubic angstroms (QPpolrz)61.598
Predicted hexadecane/gas partition coefficient (QPlogPC16)17.89
Predicted octanol/gas partition coefficient (QPlogPoct)28.224
Predicted water/gas partition coefficient (QPlogPw)12.429
Predicted octanol/water partition coefficient (QPlogPo/w)5.71
Predicted aqueous solubility (QPlogS)-6.857
Conformation-independent predicted aqueous solubility (CIQPlogS)-7.893
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.447
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)347.259
Predicted brain/blood partition coefficient (QPlogBB)-2.099
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)157.707
Predicted skin permeability, log Kp (QPlogKp)-2.594
PM3 calculated ionization potential (IP(ev))9.43
PM3 calculated electron affinity (EA(eV))0.652
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)0.888
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)79.935
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)143.847
Number of nitrogen and oxygen atoms (#NandO)10
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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