Spicaledonine



Compound IDCDAMM02186
Common nameSpicaledonine
IUPAC name(2,3,10-triacetyloxy-4,14,15,15-tetramethyl-8-methylidene-13-oxo-7-tetracyclo[9.3.1.01,9.04,9]pentadecanyl) 3-(dimethylamino)-2-hydroxy-3-phenylpropanoate
Molecular formulaC37H49NO10

Experimental data

Retention time0.42
Adduct[M+K]+
Actual mz706.299
Theoretical mz706.299
Error0.34
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.4246

Identifiers and class information

Inchi keyXYWMVQVOXQGCCB-UHFFFAOYNA-N
SmilesO=C(OC1C(OC(=O)C)C23C(C(=O)CC(C(OC(=O)C)C42C(=C)C(OC(=O)C(O)C(C=5C=CC=CC5)N(C)C)CCC14C)C3(C)C)C)C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)9
Number of reactive functional groups (#rtvFG)5
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)667.795
Computed dipole moment(dipole)3.542
Total solvent accessible surface area (SASA)883.591
Hydrophobic component of SASA (FOSA)585.062
Hydrophilic component of SASA (FISA)158.894
Pie component of the SASA (PISA)139.634
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1893.5
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)13.7
Free energy of solvation of dipole (dip^2/V)0.006624
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0155049
Globularity descriptor (glob)0.837703
Predicted polarizability in cubic angstroms (QPpolrz)65.178
Predicted hexadecane/gas partition coefficient (QPlogPC16)17.582
Predicted octanol/gas partition coefficient (QPlogPoct)31.161
Predicted water/gas partition coefficient (QPlogPw)16.85
Predicted octanol/water partition coefficient (QPlogPo/w)3.901
Predicted aqueous solubility (QPlogS)-4.251
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.566
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.55
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)76.914
Predicted brain/blood partition coefficient (QPlogBB)-1.09
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)34.208
Predicted skin permeability, log Kp (QPlogKp)-5.155
PM3 calculated ionization potential (IP(ev))9.124
PM3 calculated electron affinity (EA(eV))-0.256
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)0.556
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)57.626
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)170.927
Number of nitrogen and oxygen atoms (#NandO)11
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

Copyright © 2025