Sandoricin



Compound IDCDAMM02153
Common nameSandoricin
IUPAC namemethyl 2-[5,11-diacetyloxy-13-(furan-3-yl)-16-hydroxy-6,6,8,12-tetramethyl-17-methylidene-15-oxo-2,14-dioxatetracyclo[7.7.1.01,12.03,8]heptadecan-7-yl]acetate
Molecular formulaC31H40O11

Experimental data

Retention time7.81
Adduct[M+H]+
Actual mz589.264
Theoretical mz589.264
Error0.04
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.7849

Identifiers and class information

Inchi keyFPZCLGWPFTXULY-UHFFFAOYNA-N
SmilesO=C(OC1CC2OC34C(=C)C(CC(OC(=O)C)C4(C)C(OC(=O)C3O)C5=COC=C5)C2(C)C(CC(=O)OC)C1(C)C)C
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)5
Number of reactive functional groups (#rtvFG)4
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)588.65
Computed dipole moment(dipole)7.696
Total solvent accessible surface area (SASA)739.135
Hydrophobic component of SASA (FOSA)443.743
Hydrophilic component of SASA (FISA)177.464
Pie component of the SASA (PISA)117.927
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1562.51
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)11.95
Free energy of solvation of dipole (dip^2/V)0.0379084
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0161676
Globularity descriptor (glob)0.881027
Predicted polarizability in cubic angstroms (QPpolrz)54.293
Predicted hexadecane/gas partition coefficient (QPlogPC16)14.76
Predicted octanol/gas partition coefficient (QPlogPoct)27.028
Predicted water/gas partition coefficient (QPlogPw)15.639
Predicted octanol/water partition coefficient (QPlogPo/w)2.996
Predicted aqueous solubility (QPlogS)-4.367
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.8
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.019
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)205.591
Predicted brain/blood partition coefficient (QPlogBB)-1.262
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)89.493
Predicted skin permeability, log Kp (QPlogKp)-3.895
PM3 calculated ionization potential (IP(ev))9.497
PM3 calculated electron affinity (EA(eV))-0.197
Number of likely metabolic reactions (#metab)6
Prediction of binding to human serum albumin (QPlogKhsa)0.262
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)59.972
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)164.393
Number of nitrogen and oxygen atoms (#NandO)11
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P35372OPRM1Mu opioid receptorT47768SEA
P41145OPRK1Kappa Opioid receptorT60693SEA
P41143OPRD1Delta opioid receptorT58992SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T47768DI0013Acute pain[ICD-11: MG31]P35372OPRM1
T47768DI0059Bowel habit change[ICD-11: ME05]P35372OPRM1
T47768DI0087Chronic pain[ICD-11: MG30]P35372OPRM1
T47768DI0101Corneal disease[ICD-11: 9A76-9A78]P35372OPRM1
T47768DI0105Cough[ICD-11: MD12]P35372OPRM1
T47768DI0117Depression[ICD-11: 6A70-6A7Z]P35372OPRM1
T47768DI0124Digestive system disease[ICD-11: DE2Z]P35372OPRM1
T47768DI0218Irritable bowel syndrome[ICD-11: DD91]P35372OPRM1
T47768DI0228Large intestine motility disorder[ICD-11: DB32]P35372OPRM1
T47768DI0317Opioid use disorder[ICD-11: 6C43]P35372OPRM1
T47768DI0324Pain[ICD-11: MG30-MG3Z]P35372OPRM1
T47768DI0349Pruritus[ICD-11: EC90]P35372OPRM1
T47768DI0374Sensation disturbance[ICD-11: MB40]P35372OPRM1
T60693DI0304Non-specific cutaneous vascular symptom[ICD-11: ME64]P41145OPRK1
T60693DI0324Pain[ICD-11: MG30-MG3Z]P41145OPRK1
T60693DI0349Pruritus[ICD-11: EC90]P41145OPRK1
T58992DI0059Bowel habit change[ICD-11: ME05]P41143OPRD1
T58992DI0218Irritable bowel syndrome[ICD-11: DD91]P41143OPRD1
T58992DI0324Pain[ICD-11: MG30-MG3Z]P41143OPRD1

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