Aconifine



Compound IDCDAMM02151
Common nameAconifine
IUPAC name[8-acetyloxy-11-ethyl-2,5,7,14-tetrahydroxy-6,16,18-trimethoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.12,5.01,10.03,8.013,17]nonadecan-4-yl] benzoate
Molecular formulaC34H47NO12

Experimental data

Retention time15.47
Adduct[M+H]+
Actual mz662.317
Theoretical mz662.317
Error0.72
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.5066

Identifiers and class information

Inchi keyGMSKTJVHWUUOMY-RVRJRWMSNA-N
SmilesO=C(OC1C2C3(O)CC1(O)C(OC)C(O)C2(OC(=O)C)C4C(OC)C5C6(COC)CN(CC)C4C53C(OC)CC6O)C=7C=CC=CC7
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)661.745
Computed dipole moment(dipole)6.562
Total solvent accessible surface area (SASA)872.612
Hydrophobic component of SASA (FOSA)548.965
Hydrophilic component of SASA (FISA)145.5
Pie component of the SASA (PISA)178.147
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1816.68
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)17.7
Free energy of solvation of dipole (dip^2/V)0.0237015
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0405678
Globularity descriptor (glob)0.825143
Predicted polarizability in cubic angstroms (QPpolrz)59.903
Predicted hexadecane/gas partition coefficient (QPlogPC16)17.91
Predicted octanol/gas partition coefficient (QPlogPoct)35.821
Predicted water/gas partition coefficient (QPlogPw)24.446
Predicted octanol/water partition coefficient (QPlogPo/w)1.802
Predicted aqueous solubility (QPlogS)-2.598
Conformation-independent predicted aqueous solubility (CIQPlogS)-4.689
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.937
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)103.043
Predicted brain/blood partition coefficient (QPlogBB)-1.246
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)46.927
Predicted skin permeability, log Kp (QPlogKp)-4.388
PM3 calculated ionization potential (IP(ev))8.73
PM3 calculated electron affinity (EA(eV))0.508
Number of likely metabolic reactions (#metab)6
Prediction of binding to human serum albumin (QPlogKhsa)-0.374
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)47.608
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)153.893
Number of nitrogen and oxygen atoms (#NandO)13
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P08183ABCB1P-glycoprotein 1T25258SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T25258DI0238Lung cancer[ICD-11: 2C25]P08183ABCB1

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