1,3-Octadiene



Compound IDCDAMM02112
Common name1,3-Octadiene
IUPAC nameocta-1,3-diene
Molecular formulaC8H14

Experimental data

Retention time14.87
Adduct[M+NH4]+
Actual mz128.143
Theoretical mz128.144
Error10.32
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.2612

Identifiers and class information

Inchi keyQTYUSOHYEPOHLV-FNORWQNLSA-N
SmilesC=CC=CCCCC
SuperclassHydrocarbons
ClassUnsaturated hydrocarbons

Pharmacokinetic properties

Number of descriptor values(#stars)8
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)4
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)2
Molecular weight (mol_MW)110.199
Computed dipole moment(dipole)0.394
Total solvent accessible surface area (SASA)386.195
Hydrophobic component of SASA (FOSA)312.822
Hydrophilic component of SASA (FISA)0
Pie component of the SASA (PISA)73.373
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)589.379
Number of hydrogen bond donors (donorHB)0
Number of hydrogen bond acceptors (accptHB)0
Free energy of solvation of dipole (dip^2/V)0.0002639
Index of cohesive interaction in solids (ACxDN^.5/SA)0
Globularity descriptor (glob)0.880281
Predicted polarizability in cubic angstroms (QPpolrz)15.565
Predicted hexadecane/gas partition coefficient (QPlogPC16)3.987
Predicted octanol/gas partition coefficient (QPlogPoct)3.781
Predicted water/gas partition coefficient (QPlogPw)-0.912
Predicted octanol/water partition coefficient (QPlogPo/w)4.333
Predicted aqueous solubility (QPlogS)-4.22
Conformation-independent predicted aqueous solubility (CIQPlogS)-3.951
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.819
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)9906.04
Predicted brain/blood partition coefficient (QPlogBB)0.818
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)5899.29
Predicted skin permeability, log Kp (QPlogKp)-0.877
PM3 calculated ionization potential (IP(ev))9.196
PM3 calculated electron affinity (EA(eV))-0.169
Number of likely metabolic reactions (#metab)1
Prediction of binding to human serum albumin (QPlogKhsa)0.159
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)0
Number of nitrogen and oxygen atoms (#NandO)0
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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