Dyphylline



Compound IDCDAMM02081
Common nameDyphylline
IUPAC name7-(2,3-dihydroxypropyl)-1,3-dimethylpurine-2,6-dione
Molecular formulaC10H14N4O4

Experimental data

Retention time9.31
Adduct[M+H]+
Actual mz255.109
Theoretical mz255.109
Error0.88
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.2052

Identifiers and class information

Inchi keyKSCFJBIXMNOVSH-UHFFFAOYSA-N
SmilesO=C1C2=C(N=CN2CC(O)CO)N(C(=O)N1C)C
SuperclassOrganoheterocyclic compounds
ClassImidazopyrimidines

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)5
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)254.245
Computed dipole moment(dipole)5.662
Total solvent accessible surface area (SASA)471.958
Hydrophobic component of SASA (FOSA)234.985
Hydrophilic component of SASA (FISA)192.307
Pie component of the SASA (PISA)44.667
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)797.174
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)8.4
Free energy of solvation of dipole (dip^2/V)0.0402098
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0251704
Globularity descriptor (glob)0.880975
Predicted polarizability in cubic angstroms (QPpolrz)22.965
Predicted hexadecane/gas partition coefficient (QPlogPC16)7.787
Predicted octanol/gas partition coefficient (QPlogPoct)15.259
Predicted water/gas partition coefficient (QPlogPw)12.567
Predicted octanol/water partition coefficient (QPlogPo/w)-0.357
Predicted aqueous solubility (QPlogS)-1.661
Conformation-independent predicted aqueous solubility (CIQPlogS)-1.85
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.671
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)148.68
Predicted brain/blood partition coefficient (QPlogBB)-1.39
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)63.045
Predicted skin permeability, log Kp (QPlogKp)-4.426
PM3 calculated ionization potential (IP(ev))9.041
PM3 calculated electron affinity (EA(eV))0.569
Number of likely metabolic reactions (#metab)2
Prediction of binding to human serum albumin (QPlogKhsa)-0.805
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)63.735
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)116.475
Number of nitrogen and oxygen atoms (#NandO)8
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P21397MAOAMonoamine oxidase AT83875SEA
P27338MAOBMonoamine oxidase BT83011SEA
P34969HTR7Serotonin 7 (5-HT7) receptorT79062SEA
P29275ADORA2BAdenosine A2b receptorT86679SEA
P53985SLC16A1Monocarboxylate transporter 1 (by homology)T95842SEA
Q02750MAP2K1Dual specificity mitogen-activated protein kinase kinase 1T99057SEA
P30837ALDH1B1Acetaldehyde dehydrogenaseT99641SEA
Q15109AGERAdvanced glycosylation end product receptorT07400SEA
Q9Y6Q9NCOA3Nuclear receptor coactivator 3T26774SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T83875DI0117Depression[ICD-11: 6A70-6A7Z]P21397MAOA
T83875DI0331Parkinsonism[ICD-11: 8A00]P21397MAOA
T83011DI0115Dementia[ICD-11: 6D80-6D8Z]P27338MAOB
T83011DI0117Depression[ICD-11: 6A70-6A7Z]P27338MAOB
T83011DI0190Hypertension[ICD-11: BA00-BA04]P27338MAOB
T83011DI0243Malaria[ICD-11: 1F40-1F45]P27338MAOB
T83011DI0264Migraine[ICD-11: 8A80]P27338MAOB
T83011DI0331Parkinsonism[ICD-11: 8A00]P27338MAOB
T79062DI0025Alzheimer disease[ICD-11: 8A20]P34969HTR7
T79062DI0040Attention deficit hyperactivity disorder[ICD-11: 6A05]P34969HTR7
T79062DI0051Bipolar disorder[ICD-11: 6A60]P34969HTR7
T79062DI0117Depression[ICD-11: 6A70-6A7Z]P34969HTR7
T79062DI0265Mild neurocognitive disorder[ICD-11: 6D71]P34969HTR7
T79062DI0331Parkinsonism[ICD-11: 8A00]P34969HTR7
T79062DI0370Schizophrenia[ICD-11: 6A20]P34969HTR7
T86679DI0180Herpes simplex infection[ICD-11: 1F00]P29275ADORA2B
T86679DI0397Supraventricular tachyarrhythmia[ICD-11: BC81]P29275ADORA2B
T99057DI0262Metastatic tumour[ICD-11: 2D50-2E2Z]Q02750MAP2K1
T99057DI0336Phakomatoses/hamartoneoplastic syndrome[ICD-11: LD2D]Q02750MAP2K1
T99641DI0396Substance abuse[ICD-11: 6C40]P30837ALDH1B1
T07400DI0025Alzheimer disease[ICD-11: 8A20]Q15109AGER
T07400DI0083Chronic kidney disease[ICD-11: GB61]Q15109AGER
T07400DI0115Dementia[ICD-11: 6D80-6D8Z]Q15109AGER
T07400DI0196Hypotension[ICD-11: BA20-BA21]Q15109AGER

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