Ureidosuccinic acid



Compound IDCDAMM02063
Common nameUreidosuccinic acid
IUPAC name2-(carbamoylamino)butanedioic acid
Molecular formulaC5H8N2O5

Experimental data

Retention time10.4
Adduct[M+H]+
Actual mz177.051
Theoretical mz177.05
Error3.52
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.708

Identifiers and class information

Inchi keyHLKXYZVTANABHZ-REOHCLBHSA-N
SmilesO=C(N)NC(C(=O)O)CC(=O)O
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)2
Number of non-conjugated amide groups (#amide)1
Number of rotatable bonds (#rotor)4
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)176.129
Computed dipole moment(dipole)9.779
Total solvent accessible surface area (SASA)362.428
Hydrophobic component of SASA (FOSA)48.107
Hydrophilic component of SASA (FISA)314.321
Pie component of the SASA (PISA)0
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)556.696
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)5
Free energy of solvation of dipole (dip^2/V)0.171781
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0275917
Globularity descriptor (glob)0.903001
Predicted polarizability in cubic angstroms (QPpolrz)13.557
Predicted hexadecane/gas partition coefficient (QPlogPC16)6.446
Predicted octanol/gas partition coefficient (QPlogPoct)15.433
Predicted water/gas partition coefficient (QPlogPw)15.371
Predicted octanol/water partition coefficient (QPlogPo/w)-1.253
Predicted aqueous solubility (QPlogS)0.258
Conformation-independent predicted aqueous solubility (CIQPlogS)-0.422
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)1.888
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.337
Predicted brain/blood partition coefficient (QPlogBB)-2.248
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.294
Predicted skin permeability, log Kp (QPlogKp)-6.928
PM3 calculated ionization potential (IP(ev))10.604
PM3 calculated electron affinity (EA(eV))0.189
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-1.46
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)11.152
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)37.032
Van der Waals surface area (PSA)162.516
Number of nitrogen and oxygen atoms (#NandO)7
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
O75899GABBR2GABA-B receptorT42446SEA
P48066SLC6A11GABA transporter 3T38200SEA
O75899GABBR2GABA-B receptorT42446SEA
O00222GRM8Metabotropic glutamate receptor 8T77548SEA
P08514ITGA2BIntegrin alpha-IIb/beta-3T50688SEA
P08473MMENeprilysinT05409SEA
O15303GRM6Metabotropic glutamate receptor 6T55956SEA
Q9H4A4RNPEPAminopeptidase BT57818SEA
P11926ODC1Ornithine decarboxylaseT60366SEA
Q07075ENPEPAminopeptidase AT31956SEA
P15086CPB1Carboxypeptidase BT36725SEA
P15085CPA1Carboxypeptidase A1T33966SEA
Q9Y3Q0NAALAD2NAALADase IIT70036SEA
Q92820GGHGamma-glutamyl hydrolaseT71646SEA
P98073TMPRSS15EnteropeptidaseT75772SEA
O60235TMPRSS11DTransmembrane protease serine 11DT00302SEA
Q04609FOLH1Glutamate carboxypeptidase IIT97071SEA
P09958FURHUMAN dibasic-processing enzymeT98945SEA
Q9Y4G9PCSK6Proprotein convertase subtilisin/kexin type 6T86503SEA
Q9UN88GABRQGABA(A) receptor thetaT15161SEA
P05106ITGB3Integrin beta-3T26457SEA
Q16348PEPT2Solute carrier family 15 member 2T52067SEA
Q9HAN5TRP1Cationic trypsinogenT27602SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T42446DI0117Depression[ICD-11: 6A70-6A7Z]O75899GABBR2
T42446DI0134Epilepsy/seizure[ICD-11: 8A61-8A6Z]O75899GABBR2
T42446DI0275Multiple sclerosis[ICD-11: 8A40]O75899GABBR2
T42446DI0290Narcolepsy[ICD-11: 7A20]O75899GABBR2
T38200DI0207Indeterminate colitis[ICD-11: DD72]P48066SLC6A11
T42446DI0117Depression[ICD-11: 6A70-6A7Z]O75899GABBR2
T42446DI0134Epilepsy/seizure[ICD-11: 8A61-8A6Z]O75899GABBR2
T42446DI0275Multiple sclerosis[ICD-11: 8A40]O75899GABBR2
T42446DI0290Narcolepsy[ICD-11: 7A20]O75899GABBR2
T50688DI0007Acquired hypermelanosis[ICD-11: ED60]P08514ITGA2B
T50688DI0030Angina pectoris[ICD-11: BA40]P08514ITGA2B
T50688DI0287Myocardial infarction[ICD-11: BA41-BA43]P08514ITGA2B
T05409DI0175Heart failure[ICD-11: BD10-BD1Z]P08473MME
T60366DI0020African trypanosomiasis[ICD-11: 1F51]P11926ODC1
T31956DI0190Hypertension[ICD-11: BA00-BA04]Q07075ENPEP
T97071DI0122Diagnostic imaging[ICD-11: N.A.]Q04609FOLH1
T97071DI0346Prostate cancer[ICD-11: 2C82]Q04609FOLH1
T98945DI0263Middle East Respiratory Syndrome[ICD-11: 1D64]P09958FUR
T27602DI0250Mature B-cell lymphoma[ICD-11: 2A85]Q9HAN5TRP1
T27602DI0274Multiple myeloma[ICD-11: 2A83]Q9HAN5TRP1

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