Pulcherrimin C



Compound IDCDAMM02037
Common namePulcherrimin C
IUPAC name5,6-dibenzoyloxy-4a-hydroxy-4,7,11b-trimethyl-2,3,5,6,6a,7,11,11a-octahydro-1H-naphtho[2,1-f][1]benzofuran-4-carboxylic acid
Molecular formulaC34H36O8

Experimental data

Retention time6.75
Adduct[M+H]+
Actual mz573.25
Theoretical mz573.248
Error2.31
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.3587

Identifiers and class information

Inchi keyNBIZLELOKAWPIH-HFGZQEDANA-N
SmilesO=C(OC1C(OC(=O)C=2C=CC=CC2)C3(O)C(C(=O)O)(C)CCCC3(C)C4CC=5OC=CC5C(C)C14)C=6C=CC=CC6
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)6
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-1
Molecular weight (mol_MW)572.654
Computed dipole moment(dipole)7.314
Total solvent accessible surface area (SASA)788.738
Hydrophobic component of SASA (FOSA)265.557
Hydrophilic component of SASA (FISA)90.958
Pie component of the SASA (PISA)432.223
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1600.34
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)6.25
Free energy of solvation of dipole (dip^2/V)0.033426
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0079241
Globularity descriptor (glob)0.838894
Predicted polarizability in cubic angstroms (QPpolrz)58.167
Predicted hexadecane/gas partition coefficient (QPlogPC16)16.78
Predicted octanol/gas partition coefficient (QPlogPoct)25.128
Predicted water/gas partition coefficient (QPlogPw)11.473
Predicted octanol/water partition coefficient (QPlogPo/w)7.136
Predicted aqueous solubility (QPlogS)-7.305
Conformation-independent predicted aqueous solubility (CIQPlogS)-9.358
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.393
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)344.304
Predicted brain/blood partition coefficient (QPlogBB)-0.66
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)198.736
Predicted skin permeability, log Kp (QPlogKp)-1.097
PM3 calculated ionization potential (IP(ev))8.988
PM3 calculated electron affinity (EA(eV))0.504
Number of likely metabolic reactions (#metab)4
Prediction of binding to human serum albumin (QPlogKhsa)1.335
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)88.217
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)116.897
Number of nitrogen and oxygen atoms (#NandO)8
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P08183ABCB1P-glycoprotein 1T25258SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T25258DI0238Lung cancer[ICD-11: 2C25]P08183ABCB1

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