Patuletin 3-rhamnoside-7-(3\'\'\',4\'\'\'-diacetylrhamnoside)



Compound IDCDAMM02001
Common namePatuletin 3-rhamnoside-7-(3\'\'\',4\'\'\'-diacetylrhamnoside)
IUPAC name[4-acetyloxy-6-[2-(3,4-dihydroxyphenyl)-5-hydroxy-6-methoxy-4-oxo-3-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxychromen-7-yl]oxy-5-hydroxy-2-methyloxan-3-yl] acetate
Molecular formulaC32H36O18

Experimental data

Retention time15.33
Adduct[M+H]+
Actual mz709.202
Theoretical mz709.197
Error6.66
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.3111

Identifiers and class information

Inchi keyAZUUVSJJSGCVGM-FQZLUHJQNA-N
SmilesO=C(OC1C(O)C(OC2=CC=3OC(=C(OC4OC(C)C(O)C(O)C4O)C(=O)C3C(O)=C2OC)C=5C=CC(O)=C(O)C5)OC(C)C1OC(=O)C)C
SuperclassPhenylpropanoids and polyketides
ClassFlavonoids

Pharmacokinetic properties

Number of descriptor values(#stars)6
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)14
Number of reactive functional groups (#rtvFG)4
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)708.626
Computed dipole moment(dipole)9.834
Total solvent accessible surface area (SASA)967.878
Hydrophobic component of SASA (FOSA)506.897
Hydrophilic component of SASA (FISA)333.459
Pie component of the SASA (PISA)127.522
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1883.93
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)20.2
Free energy of solvation of dipole (dip^2/V)0.0513348
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0511218
Globularity descriptor (glob)0.762175
Predicted polarizability in cubic angstroms (QPpolrz)61.469
Predicted hexadecane/gas partition coefficient (QPlogPC16)20.488
Predicted octanol/gas partition coefficient (QPlogPoct)41.495
Predicted water/gas partition coefficient (QPlogPw)30.78
Predicted octanol/water partition coefficient (QPlogPo/w)0.058
Predicted aqueous solubility (QPlogS)-4.403
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.26
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.988
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)6.819
Predicted brain/blood partition coefficient (QPlogBB)-4.107
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)2.253
Predicted skin permeability, log Kp (QPlogKp)-5.872
PM3 calculated ionization potential (IP(ev))9.058
PM3 calculated electron affinity (EA(eV))0.918
Number of likely metabolic reactions (#metab)8
Prediction of binding to human serum albumin (QPlogKhsa)-0.802
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)3.333
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)274.355
Number of nitrogen and oxygen atoms (#NandO)18
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P43166CA7Carbonic anhydrase VIIT37541SEA
P22748CA4Carbonic anhydrase IVT53378SEA
P15121AKR1B1Aldose reductaseT26623SEA
P09917ALOX5Arachidonate 5-lipoxygenaseT00140SEA
P18054ALOX12Arachidonate 12-lipoxygenaseT35527SEA
P60568IL2Interleukin-2T61698SEA
Q9UNQ0ABCG2ATP-binding cassette sub-family G member 2T56556SEA
P51812RPS6KA3Ribosomal protein S6 kinase alpha 3T03279SwissTargetPrediction
Q9NPH5NOX4NADPH oxidase 4T29741SEA
Q9GZQ4NMUR2Neuromedin-U receptor 2T04210SEA
P47989XDHXanthine dehydrogenaseT40954SEA
Q16678CYP1B1Cytochrome P450 1B1T92521SEA
Q9HC98NEK6Serine/threonine-protein kinase NEK6T78992SEA
Q13332PTPRSReceptor-type tyrosine-protein phosphatase ST10147SEA
Q9NZ08ERAP1Endoplasmic reticulum aminopeptidase 1T72849SEA
P16220CREB1Cyclic AMP-responsive element-binding proteinT92098SEA
Q15717ELAVL1ELAV-like protein 1T78349SEA
P30837ALDH1B1Acetaldehyde dehydrogenaseT99641SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T53378DI0046Bacterial infection[ICD-11: 1A00-1C4Z]P22748CA4
T53378DI0166Glaucoma[ICD-11: 9C61]P22748CA4
T53378DI0372Seborrhoeic dermatitis[ICD-11: EA81]P22748CA4
T26623DI0298Neuropathy[ICD-11: 8C0Z]P15121AKR1B1
T26623DI0366Rheumatoid arthritis[ICD-11: FA20]P15121AKR1B1
T00140DI0037Asthma[ICD-11: CA23]P09917ALOX5
T00140DI0147Filariasis[ICD-11: 1F66]P09917ALOX5
T00140DI0403Thrombocytopenia[ICD-11: 3B64]P09917ALOX5
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T56556DI0218Irritable bowel syndrome[ICD-11: DD91]Q9UNQ0ABCG2
T56556DI0366Rheumatoid arthritis[ICD-11: FA20]Q9UNQ0ABCG2
T03279DI0249Mature B-cell leukaemia[ICD-11: 2A82]P51812RPS6KA3
T29741DI0146Fibrosis[ICD-11: GA14-GC01]Q9NPH5NOX4
T40954DI0206Inborn purine/pyrimidine/nucleotide metabolism error[ICD-11: 5C55]P47989XDH
T40954DI0266Mineral deficiency[ICD-11: 5B5K]P47989XDH
T10147DI0057Bone paget disease[ICD-11: FB85]Q13332PTPRS
T99641DI0396Substance abuse[ICD-11: 6C40]P30837ALDH1B1

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