Gniditrin



Compound IDCDAMM01967
Common nameGniditrin
IUPAC name[6,7-dihydroxy-8-(hydroxymethyl)-4,18-dimethyl-5-oxo-14-phenyl-16-prop-1-en-2-yl-9,13,15,19-tetraoxahexacyclo[12.4.1.01,11.02,6.08,10.012,16]nonadec-3-en-17-yl] deca-2,4,6-trienoate
Molecular formulaC37H42O10

Experimental data

Retention time19.55
Adduct[M+K]+
Actual mz685.233
Theoretical mz685.241
Error12.34
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.2016

Identifiers and class information

Inchi keyNEIGQRKMHFDLTK-ZEDIUBETNA-N
SmilesO=C(OC1C(C)C23OC4(OC(C3C5OC5(CO)C(O)C6(O)C(=O)C(=CC62)C)C1(O4)C(=C)C)C=7C=CC=CC7)C=CC=CC=CCCC
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)3
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)646.733
Computed dipole moment(dipole)7.94
Total solvent accessible surface area (SASA)940.921
Hydrophobic component of SASA (FOSA)535.326
Hydrophilic component of SASA (FISA)160.293
Pie component of the SASA (PISA)245.303
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1869.01
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)11.15
Free energy of solvation of dipole (dip^2/V)0.0337285
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0118501
Globularity descriptor (glob)0.779865
Predicted polarizability in cubic angstroms (QPpolrz)62.639
Predicted hexadecane/gas partition coefficient (QPlogPC16)18.632
Predicted octanol/gas partition coefficient (QPlogPoct)28.974
Predicted water/gas partition coefficient (QPlogPw)14.322
Predicted octanol/water partition coefficient (QPlogPo/w)5.462
Predicted aqueous solubility (QPlogS)-6.876
Conformation-independent predicted aqueous solubility (CIQPlogS)-8.334
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-6.264
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)299.12
Predicted brain/blood partition coefficient (QPlogBB)-1.977
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)134.215
Predicted skin permeability, log Kp (QPlogKp)-2.361
PM3 calculated ionization potential (IP(ev))9.265
PM3 calculated electron affinity (EA(eV))0.912
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)0.838
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)77.323
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)140.461
Number of nitrogen and oxygen atoms (#NandO)10
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
Q05655PRKCDProtein kinase C deltaT44861SwissTargetPrediction
P51684CCR6C-C chemokine receptor type 6T63165SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T44861DI0287Myocardial infarction[ICD-11: BA41-BA43]Q05655PRKCD
T63165DI0207Indeterminate colitis[ICD-11: DD72]P51684CCR6

Copyright © 2025