Tricalysiolide I



Compound IDCDAMM01784
Common nameTricalysiolide I
IUPAC name(9-hydroxy-17-methoxy-12-methyl-7-oxo-8-oxapentacyclo[14.2.1.01,13.04,12.05,9]nonadec-5-en-17-yl)methyl hexadecanoate
Molecular formulaC37H60O6

Experimental data

Retention time16.01
Adduct[M+H]+
Actual mz601.449
Theoretical mz601.446
Error5.03
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.7089

Identifiers and class information

Inchi keyFUZRZQWSTPUELR-GVLHXGRQNA-N
SmilesO=C1OC2(O)C(=C1)C3CCC45CC(CCC4C3(C)CC2)C(OC)(COC(=O)CCCCCCCCCCCCCCC)C5
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)10
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)18
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)600.877
Computed dipole moment(dipole)5.922
Total solvent accessible surface area (SASA)1094.41
Hydrophobic component of SASA (FOSA)919.33
Hydrophilic component of SASA (FISA)142.178
Pie component of the SASA (PISA)32.9
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)2059.56
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)6.5
Free energy of solvation of dipole (dip^2/V)0.017028
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0059393
Globularity descriptor (glob)0.715324
Predicted polarizability in cubic angstroms (QPpolrz)65.026
Predicted hexadecane/gas partition coefficient (QPlogPC16)19.611
Predicted octanol/gas partition coefficient (QPlogPoct)26.118
Predicted water/gas partition coefficient (QPlogPw)7.44
Predicted octanol/water partition coefficient (QPlogPo/w)8.584
Predicted aqueous solubility (QPlogS)-10.815
Conformation-independent predicted aqueous solubility (CIQPlogS)-9.045
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-6.295
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)444.244
Predicted brain/blood partition coefficient (QPlogBB)-2.374
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)205.812
Predicted skin permeability, log Kp (QPlogKp)-2.296
PM3 calculated ionization potential (IP(ev))10.796
PM3 calculated electron affinity (EA(eV))0.684
Number of likely metabolic reactions (#metab)2
Prediction of binding to human serum albumin (QPlogKhsa)2.167
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)103.097
Number of nitrogen and oxygen atoms (#NandO)6
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P17612PRKACAcAMP-dependent protein kinase alpha-catalytic subunitT12808SEA
Q02156PRKCEProtein kinase C epsilonT00895SEA
P35813PPM1AProtein phosphatase 2C alphaT55260SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T12808DI0279Muscular atrophy[ICD-11: 8B61]P17612PRKACA
T00895DI0033Anxiety disorder[ICD-11: 6B00-6B0Z]Q02156PRKCE
T00895DI0243Malaria[ICD-11: 1F40-1F45]Q02156PRKCE
T55260DI0268Molluscum contagiosum[ICD-11: 1E76]P35813PPM1A

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