Vulgaxanthin II



Compound IDCDAMM01779
Common nameVulgaxanthin II
IUPAC name4-[2-(1,3-dicarboxypropylimino)ethylidene]-2,3-dihydro-1H-pyridine-2,6-dicarboxylic acid
Molecular formulaC14H16N2O8

Experimental data

Retention time0.48
Adduct[M+H]+
Actual mz341.099
Theoretical mz341.098
Error2.12
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score8.1256

Identifiers and class information

Inchi keyPOYIZOSTYKKRNT-XWKOYBCNNA-N
SmilesO=C(O)C1=CC(=CC=NC(C(=O)O)CCC(=O)O)CC(N1)C(=O)O
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)5
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)4
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)10
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)340.289
Computed dipole moment(dipole)20.633
Total solvent accessible surface area (SASA)606.287
Hydrophobic component of SASA (FOSA)151.512
Hydrophilic component of SASA (FISA)425.342
Pie component of the SASA (PISA)29.434
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1032.32
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)10.5
Free energy of solvation of dipole (dip^2/V)0.412411
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0387254
Globularity descriptor (glob)0.814758
Predicted polarizability in cubic angstroms (QPpolrz)29.019
Predicted hexadecane/gas partition coefficient (QPlogPC16)12.087
Predicted octanol/gas partition coefficient (QPlogPoct)28.782
Predicted water/gas partition coefficient (QPlogPw)19.731
Predicted octanol/water partition coefficient (QPlogPo/w)0.288
Predicted aqueous solubility (QPlogS)-2.444
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.322
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)2.56
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.015
Predicted brain/blood partition coefficient (QPlogBB)-4.311
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.002
Predicted skin permeability, log Kp (QPlogKp)-8.295
PM3 calculated ionization potential (IP(ev))8.977
PM3 calculated electron affinity (EA(eV))1.449
Number of likely metabolic reactions (#metab)5
Prediction of binding to human serum albumin (QPlogKhsa)-1.507
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)220.824
Number of nitrogen and oxygen atoms (#NandO)10
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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