Bn-NCC-1



Compound IDCDAMM01769
Common nameBn-NCC-1
IUPAC name2-[[3-[2-(2-carboxyacetyl)oxyethyl]-5-formyl-4-methyl-1H-pyrrol-2-yl]methyl]-6-[3-(2-carboxyethyl)-5-[(4-ethenyl-3-methyl-5-oxo-1,2-dihydropyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-2-yl]-3-methyl-4-oxo-5,6-dihydro-1H-cyclopenta[b]pyrrole-5-carboxylic acid
Molecular formulaC37H40N4O11

Experimental data

Retention time12.74
Adduct[M+H]+
Actual mz717.278
Theoretical mz717.276
Error1.85
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.0935

Identifiers and class information

Inchi keyGVQYIMKPSDOTAH-UHFFFAOYNA-N
SmilesO=CC=1NC(=C(C1C)CCOC(=O)CC(=O)O)CC=2NC3=C(C(=O)C(C(=O)O)C3C=4NC(=C(C4CCC(=O)O)C)CC5NC(=O)C(C=C)=C5C)C2C
SuperclassOrganoheterocyclic compounds
ClassTetrapyrroles and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)6
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)3
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)15
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)716.743
Computed dipole moment(dipole)10.105
Total solvent accessible surface area (SASA)935.21
Hydrophobic component of SASA (FOSA)443.024
Hydrophilic component of SASA (FISA)432.781
Pie component of the SASA (PISA)59.405
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1950.09
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)12.5
Free energy of solvation of dipole (dip^2/V)0.0523649
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0298872
Globularity descriptor (glob)0.807159
Predicted polarizability in cubic angstroms (QPpolrz)62.824
Predicted hexadecane/gas partition coefficient (QPlogPC16)20.554
Predicted octanol/gas partition coefficient (QPlogPoct)37.027
Predicted water/gas partition coefficient (QPlogPw)21.644
Predicted octanol/water partition coefficient (QPlogPo/w)4.378
Predicted aqueous solubility (QPlogS)-5.932
Conformation-independent predicted aqueous solubility (CIQPlogS)-9.607
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)0.487
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.013
Predicted brain/blood partition coefficient (QPlogBB)-4.769
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.005
Predicted skin permeability, log Kp (QPlogKp)-7.846
PM3 calculated ionization potential (IP(ev))9.191
PM3 calculated electron affinity (EA(eV))0.415
Number of likely metabolic reactions (#metab)13
Prediction of binding to human serum albumin (QPlogKhsa)0.187
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)310.472
Number of nitrogen and oxygen atoms (#NandO)15
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)3

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
Q92887CMOATMultidrug resistance-associated protein 2T61792SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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