Lyciumoside IV



Compound IDCDAMM01700
Common nameLyciumoside IV
IUPAC name2-[4,5-dihydroxy-2-(hydroxymethyl)-6-[3,7,11,15-tetramethyl-16-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyhexadeca-1,6,10,14-tetraen-3-yl]oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol
Molecular formulaC38H64O16

Experimental data

Retention time13.9
Adduct[M+H]+
Actual mz777.434
Theoretical mz777.426
Error9.55
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.2361

Identifiers and class information

Inchi keyOEOWMDSFDQHCFJ-IDGBGVIZNA-N
SmilesOCC1OC(OCC(=CCCC(=CCCC(=CCCC(OC2OC(CO)C(OC3OC(C)C(O)C(O)C3O)C(O)C2O)(C=C)C)C)C)C)C(O)C(O)C1O
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)14
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)29
Number of reactive functional groups (#rtvFG)3
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)776.914
Computed dipole moment(dipole)8.778
Total solvent accessible surface area (SASA)1162.34
Hydrophobic component of SASA (FOSA)786.397
Hydrophilic component of SASA (FISA)327.275
Pie component of the SASA (PISA)48.671
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)2349.47
Number of hydrogen bond donors (donorHB)10
Number of hydrogen bond acceptors (accptHB)26.25
Free energy of solvation of dipole (dip^2/V)0.0327966
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0714159
Globularity descriptor (glob)0.735321
Predicted polarizability in cubic angstroms (QPpolrz)69.716
Predicted hexadecane/gas partition coefficient (QPlogPC16)25.198
Predicted octanol/gas partition coefficient (QPlogPoct)52.588
Predicted water/gas partition coefficient (QPlogPw)39.178
Predicted octanol/water partition coefficient (QPlogPo/w)-0.2
Predicted aqueous solubility (QPlogS)-2.901
Conformation-independent predicted aqueous solubility (CIQPlogS)-4.065
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-6.047
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)7.805
Predicted brain/blood partition coefficient (QPlogBB)-5.22
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)2.608
Predicted skin permeability, log Kp (QPlogKp)-4.595
PM3 calculated ionization potential (IP(ev))9.183
PM3 calculated electron affinity (EA(eV))-0.777
Number of likely metabolic reactions (#metab)19
Prediction of binding to human serum albumin (QPlogKhsa)-1.565
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)2.871
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)248.102
Number of nitrogen and oxygen atoms (#NandO)16
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P15692VEGFAVascular endothelial growth factor AT20761SEA
P05230FGF1Acidic fibroblast growth factorT18639SEA
P09038FGF2Basic fibroblast growth factorT31621SEA
P17931LGALS3Galectin-3T72038SEA
P04746AMY2APancreatic alpha-amylaseT86918SEA
P14679TYRTyrosinaseT97035SEA
Q99417MYCBPMYCBP messenger RNAT37298SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T20761DI0095Colorectal cancer[ICD-11: 2B91]P15692VEGFA
T20761DI0365Retinopathy[ICD-11: 9B71]P15692VEGFA
T20761DI0430Vascular system developmental anomaly[ICD-11: LA90]P15692VEGFA
T18639DI0081Chronic arterial occlusive disease[ICD-11: BD4Z]P05230FGF1
T18639DI0102Coronary atherosclerosis[ICD-11: BA52]P05230FGF1
T31621DI0005Acne vulgaris[ICD-11: ED80]P09038FGF2
T72038DI0190Hypertension[ICD-11: BA00-BA04]P17931LGALS3
T72038DI0199Idiopathic interstitial pneumonitis[ICD-11: CB03]P17931LGALS3
T72038DI0252Melanoma[ICD-11: 2C30]P17931LGALS3
T72038DI0302Non-alcoholic fatty liver disease[ICD-11: DB92]P17931LGALS3
T72038DI0351Psoriasis[ICD-11: EA90]P17931LGALS3
T86918DI0110Cystic fibrosis[ICD-11: CA25]P04746AMY2A
T86918DI0328Pancreatic malfunction[ICD-11: DC30-DC3Z]P04746AMY2A
T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR
T37298DI0235Liver cancer[ICD-11: 2C12]Q99417MYCBP

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