Siphonol C



Compound IDCDAMM01649
Common nameSiphonol C
IUPAC name[7,10-diacetyloxy-5-benzoyloxy-2-ethenyl-6,10a-dihydroxy-4b-(hydroxymethyl)-2,8,8-trimethyl-1-oxo-4,4a,5,6,7,8a,9,10-octahydro-3H-phenanthren-4-yl] benzoate
Molecular formulaC38H44O12

Experimental data

Retention time2.16
Adduct[M+H]+
Actual mz693.299
Theoretical mz693.29
Error11.86
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.5526

Identifiers and class information

Inchi keyOCMIPFCAXYMOEC-GKIRPWIQNA-N
SmilesO=C(OC1CC(C=C)(C(=O)C2(O)C(OC(=O)C)CC3C(C)(C)C(OC(=O)C)C(O)C(OC(=O)C=4C=CC=CC4)C3(CO)C12)C)C=5C=CC=CC5
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)11
Number of reactive functional groups (#rtvFG)4
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)692.758
Computed dipole moment(dipole)2.511
Total solvent accessible surface area (SASA)907.472
Hydrophobic component of SASA (FOSA)401.268
Hydrophilic component of SASA (FISA)188.949
Pie component of the SASA (PISA)317.255
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1945.61
Number of hydrogen bond donors (donorHB)3
Number of hydrogen bond acceptors (accptHB)14.15
Free energy of solvation of dipole (dip^2/V)0.0032401
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0270075
Globularity descriptor (glob)0.830558
Predicted polarizability in cubic angstroms (QPpolrz)67.676
Predicted hexadecane/gas partition coefficient (QPlogPC16)19.964
Predicted octanol/gas partition coefficient (QPlogPoct)35.505
Predicted water/gas partition coefficient (QPlogPw)21.251
Predicted octanol/water partition coefficient (QPlogPo/w)4.459
Predicted aqueous solubility (QPlogS)-5.709
Conformation-independent predicted aqueous solubility (CIQPlogS)-8.188
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.787
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)159.992
Predicted brain/blood partition coefficient (QPlogBB)-1.926
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)68.245
Predicted skin permeability, log Kp (QPlogKp)-2.828
PM3 calculated ionization potential (IP(ev))10.034
PM3 calculated electron affinity (EA(eV))0.619
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)0.631
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)66.588
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)185.768
Number of nitrogen and oxygen atoms (#NandO)12
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P08183ABCB1P-glycoprotein 1T25258SEA
Q08828ADCY1Brain adenylate cyclase 1T63609SEA
P51843NR0B1Orphan nuclear receptor DAX-1T23191SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T25258DI0238Lung cancer[ICD-11: 2C25]P08183ABCB1
T63609DI0306Nutritional deficiency[ICD-11: 5B50-5B71]Q08828ADCY1

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