Matterionate A



Compound IDCDAMM01564
Common nameMatterionate A
IUPAC name3-hydroxy-3-methyl-5-oxo-5-[[3,4,5-trihydroxy-6-[[5-hydroxy-2-(4-methoxyphenyl)-6,8-dimethyl-4-oxo-2,3-dihydrochromen-7-yl]oxy]oxan-2-yl]methoxy]pentanoic acid
Molecular formulaC30H36O14

Experimental data

Retention time6.34
Adduct[M+H]+
Actual mz621.225
Theoretical mz621.218
Error10.98
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.4229

Identifiers and class information

Inchi keySMLRKPPCBXFZQW-PKYCRGAMNA-N
SmilesO=C(O)CC(O)(C)CC(=O)OCC1OC(OC=2C(=C(O)C=3C(=O)CC(OC3C2C)C4=CC=C(OC)C=C4)C)C(O)C(O)C1O
SuperclassPhenylpropanoids and polyketides
ClassFlavonoids

Pharmacokinetic properties

Number of descriptor values(#stars)4
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)14
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)620.606
Computed dipole moment(dipole)7.102
Total solvent accessible surface area (SASA)859.379
Hydrophobic component of SASA (FOSA)393.746
Hydrophilic component of SASA (FISA)308.942
Pie component of the SASA (PISA)156.691
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1699.85
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)14.55
Free energy of solvation of dipole (dip^2/V)0.029669
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0338617
Globularity descriptor (glob)0.801531
Predicted polarizability in cubic angstroms (QPpolrz)54.381
Predicted hexadecane/gas partition coefficient (QPlogPC16)18.1
Predicted octanol/gas partition coefficient (QPlogPoct)32.825
Predicted water/gas partition coefficient (QPlogPw)22.056
Predicted octanol/water partition coefficient (QPlogPo/w)2.163
Predicted aqueous solubility (QPlogS)-4.383
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.695
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.683
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)2.95
Predicted brain/blood partition coefficient (QPlogBB)-3.486
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)1.159
Predicted skin permeability, log Kp (QPlogKp)-5.317
PM3 calculated ionization potential (IP(ev))9.01
PM3 calculated electron affinity (EA(eV))0.771
Number of likely metabolic reactions (#metab)12
Prediction of binding to human serum albumin (QPlogKhsa)-0.365
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)9.14
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)229.966
Number of nitrogen and oxygen atoms (#NandO)14
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P11926ODC1Ornithine decarboxylaseT60366SEA
P60568IL2Interleukin-2T61698SEA
Q9NUW8TDP1Tyrosyl-DNA phosphodiesterase 1T33492SEA
Q9NZ08ERAP1Endoplasmic reticulum aminopeptidase 1T72849SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T60366DI0020African trypanosomiasis[ICD-11: 1F51]P11926ODC1
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2

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