Tetrahelin E



Compound IDCDAMM01563
Common nameTetrahelin E
IUPAC namemethyl 4-(3-acetyloxy-2-hydroxy-2-methylbutanoyl)oxy-5-(3-hydroxy-3-methylbutanoyl)oxy-10-methyl-3-methylidene-2-oxo-3a,4,5,8,9,11a-hexahydrocyclodeca[b]furan-6-carboxylate
Molecular formulaC28H38O12

Experimental data

Retention time5.69
Adduct[M+Na]+
Actual mz589.228
Theoretical mz589.225
Error4.55
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.3443

Identifiers and class information

Inchi keyOOBGGZKARNTUOS-QOZIAXCINA-N
SmilesO=C(OC)C1=CCCC(=CC2OC(=O)C(=C)C2C(OC(=O)C(O)(C)C(OC(=O)C)C)C1OC(=O)CC(O)(C)C)C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)11
Number of reactive functional groups (#rtvFG)3
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)566.601
Computed dipole moment(dipole)4.662
Total solvent accessible surface area (SASA)767.945
Hydrophobic component of SASA (FOSA)568.95
Hydrophilic component of SASA (FISA)170.583
Pie component of the SASA (PISA)28.411
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1607.02
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)11.5
Free energy of solvation of dipole (dip^2/V)0.0135254
Index of cohesive interaction in solids (ACxDN^.5/SA)0.014975
Globularity descriptor (glob)0.864003
Predicted polarizability in cubic angstroms (QPpolrz)51.367
Predicted hexadecane/gas partition coefficient (QPlogPC16)14.47
Predicted octanol/gas partition coefficient (QPlogPoct)24.999
Predicted water/gas partition coefficient (QPlogPw)13.286
Predicted octanol/water partition coefficient (QPlogPo/w)3.396
Predicted aqueous solubility (QPlogS)-4.053
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.975
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.868
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)238.925
Predicted brain/blood partition coefficient (QPlogBB)-1.623
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)105.275
Predicted skin permeability, log Kp (QPlogKp)-3.507
PM3 calculated ionization potential (IP(ev))9.931
PM3 calculated electron affinity (EA(eV))0.532
Number of likely metabolic reactions (#metab)9
Prediction of binding to human serum albumin (QPlogKhsa)0.205
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)63.478
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)195.572
Number of nitrogen and oxygen atoms (#NandO)12
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P19838NFKB1Nuclear factor NF-kappa-B p105 subunitT83145SEA
P17612PRKACAcAMP-dependent protein kinase alpha-catalytic subunitT12808SwissTargetPrediction
P35354PTGS2Cyclooxygenase-2T66665SwissTargetPrediction
Q05655PRKCDProtein kinase C deltaT44861SwissTargetPrediction

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T83145DI0218Irritable bowel syndrome[ICD-11: DD91]P19838NFKB1
T83145DI0366Rheumatoid arthritis[ICD-11: FA20]P19838NFKB1
T12808DI0279Muscular atrophy[ICD-11: 8B61]P17612PRKACA
T66665DI0087Chronic pain[ICD-11: MG30]P35354PTGS2
T66665DI0145Female pelvic pain[ICD-11: GA34]P35354PTGS2
T66665DI0188Hyper-lipoproteinaemia[ICD-11: 5C80]P35354PTGS2
T66665DI0207Indeterminate colitis[ICD-11: DD72]P35354PTGS2
T66665DI0227Knee osteoarthritis[ICD-11: FA01]P35354PTGS2
T66665DI0320Osteoarthritis[ICD-11: FA00-FA05]P35354PTGS2
T66665DI0324Pain[ICD-11: MG30-MG3Z]P35354PTGS2
T66665DI0366Rheumatoid arthritis[ICD-11: FA20]P35354PTGS2
T66665DI0416Tuberculosis[ICD-11: 1B10-1B12]P35354PTGS2
T44861DI0287Myocardial infarction[ICD-11: BA41-BA43]Q05655PRKCD

Copyright © 2025