Delsemine B



Compound IDCDAMM01525
Common nameDelsemine B
IUPAC name(11-ethyl-8,9-dihydroxy-4,6,16,18-tetramethoxy-11-azahexacyclo[7.7.2.12,5.01,10.03,8.013,17]nonadecan-13-yl)methyl 2-[(4-amino-3-methyl-4-oxobutanoyl)amino]benzoate
Molecular formulaC37H53N3O10

Experimental data

Retention time4
Adduct[M+H]+
Actual mz700.383
Theoretical mz700.38
Error3.18
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.5071

Identifiers and class information

Inchi keyZWPGENPRTLGXDK-QQABXTFKNA-N
SmilesO=C(OCC12CN(CC)C3C4(O)C(OC)C1C3(C(OC)CC2)C5CC6C(OC)CC4(O)C5C6OC)C=7C=CC=CC7NC(=O)CC(C(=O)N)C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)1
Number of rotatable bonds (#rotor)14
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)699.84
Computed dipole moment(dipole)6.447
Total solvent accessible surface area (SASA)981.809
Hydrophobic component of SASA (FOSA)657.755
Hydrophilic component of SASA (FISA)197.107
Pie component of the SASA (PISA)126.946
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1988.69
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)16.3
Free energy of solvation of dipole (dip^2/V)0.0209031
Index of cohesive interaction in solids (ACxDN^.5/SA)0.033204
Globularity descriptor (glob)0.778962
Predicted polarizability in cubic angstroms (QPpolrz)65.656
Predicted hexadecane/gas partition coefficient (QPlogPC16)19.759
Predicted octanol/gas partition coefficient (QPlogPoct)37.009
Predicted water/gas partition coefficient (QPlogPw)25.142
Predicted octanol/water partition coefficient (QPlogPo/w)2.236
Predicted aqueous solubility (QPlogS)-3.594
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.337
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.066
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)20.195
Predicted brain/blood partition coefficient (QPlogBB)-2.047
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)13.882
Predicted skin permeability, log Kp (QPlogKp)-5.423
PM3 calculated ionization potential (IP(ev))9
PM3 calculated electron affinity (EA(eV))0.712
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)-0.184
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)37.485
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)27.435
Van der Waals surface area (PSA)171.48
Number of nitrogen and oxygen atoms (#NandO)13
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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