Lancerodiol vanillate



Compound IDCDAMM01510
Common nameLancerodiol vanillate
IUPAC name(3-hydroxy-6,8a-dimethyl-7-oxo-3-propan-2-yl-2,3a,4,8-tetrahydro-1H-azulen-4-yl) 4-hydroxy-3-methoxybenzoate
Molecular formulaC23H30O6

Experimental data

Retention time10.07
Adduct[M+H]+
Actual mz403.21
Theoretical mz403.211
Error2.42
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.5471

Identifiers and class information

Inchi keyOZMABICMIHKNMC-MSHHELIXNA-N
SmilesO=C(OC1C=C(C(=O)CC2(C)CCC(O)(C(C)C)C12)C)C3=CC=C(O)C(OC)=C3
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)6
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-1
Molecular weight (mol_MW)402.486
Computed dipole moment(dipole)3.989
Total solvent accessible surface area (SASA)646.628
Hydrophobic component of SASA (FOSA)419.886
Hydrophilic component of SASA (FISA)127.415
Pie component of the SASA (PISA)99.328
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1240.67
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)6.25
Free energy of solvation of dipole (dip^2/V)0.0128274
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0136691
Globularity descriptor (glob)0.863539
Predicted polarizability in cubic angstroms (QPpolrz)40.594
Predicted hexadecane/gas partition coefficient (QPlogPC16)11.802
Predicted octanol/gas partition coefficient (QPlogPoct)19.718
Predicted water/gas partition coefficient (QPlogPw)10.58
Predicted octanol/water partition coefficient (QPlogPo/w)3.587
Predicted aqueous solubility (QPlogS)-4.785
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.054
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.214
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)613.234
Predicted brain/blood partition coefficient (QPlogBB)-0.937
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)291.608
Predicted skin permeability, log Kp (QPlogKp)-2.942
PM3 calculated ionization potential (IP(ev))9.248
PM3 calculated electron affinity (EA(eV))0.644
Number of likely metabolic reactions (#metab)6
Prediction of binding to human serum albumin (QPlogKhsa)0.516
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)102.711
Number of nitrogen and oxygen atoms (#NandO)6
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P11926ODC1Ornithine decarboxylaseT60366SEA
P18031PTPN1Protein-tyrosine phosphatase 1BT16347SwissTargetPrediction

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T60366DI0020African trypanosomiasis[ICD-11: 1F51]P11926ODC1
T16347DI0009Acute diabete complication[ICD-11: 5A2Y]P18031PTPN1
T16347DI0062Breast cancer[ICD-11: 2C60-2C6Y]P18031PTPN1
T16347DI0308Obesity[ICD-11: 5B80-5B81]P18031PTPN1
T16347DI0417Type 2 diabetes mellitus[ICD-11: 5A11]P18031PTPN1

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