Chrycolide



Compound IDCDAMM01504
Common nameChrycolide
IUPAC name7-hydroxy-3-thiophen-2-yl-3H-2-benzofuran-1-one
Molecular formulaC12H8O3S

Experimental data

Retention time3.01
Adduct[M+H]+
Actual mz233.023
Theoretical mz233.026
Error14.92
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.1893

Identifiers and class information

Inchi keyCLGIBOHWUJNNKL-UHFFFAOYNA-N
SmilesO=C1OC(C=2SC=CC2)C=3C=CC=C(O)C13
SuperclassOrganoheterocyclic compounds
ClassBenzofurans

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)1
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)0
Molecular weight (mol_MW)232.253
Computed dipole moment(dipole)7.903
Total solvent accessible surface area (SASA)424.399
Hydrophobic component of SASA (FOSA)20.506
Hydrophilic component of SASA (FISA)109.884
Pie component of the SASA (PISA)247.927
Weakly polar component of the SASA (WPSA)46.082
Total solvent accesible volume (volume)702.601
Number of hydrogen bond donors (donorHB)0
Number of hydrogen bond acceptors (accptHB)2.75
Free energy of solvation of dipole (dip^2/V)0.0888914
Index of cohesive interaction in solids (ACxDN^.5/SA)0
Globularity descriptor (glob)0.900595
Predicted polarizability in cubic angstroms (QPpolrz)23.69
Predicted hexadecane/gas partition coefficient (QPlogPC16)7.695
Predicted octanol/gas partition coefficient (QPlogPoct)10.537
Predicted water/gas partition coefficient (QPlogPw)5.679
Predicted octanol/water partition coefficient (QPlogPo/w)2.245
Predicted aqueous solubility (QPlogS)-2.858
Conformation-independent predicted aqueous solubility (CIQPlogS)-3.504
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.323
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)899.235
Predicted brain/blood partition coefficient (QPlogBB)-0.287
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)788.737
Predicted skin permeability, log Kp (QPlogKp)-2.575
PM3 calculated ionization potential (IP(ev))9.69
PM3 calculated electron affinity (EA(eV))0.745
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-0.12
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)92.961
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)62.968
Number of nitrogen and oxygen atoms (#NandO)3
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
O43826SLC37A4Glucose-6-phosphate translocaseT47306SEA
Q9NXA8SIRT5NAD-dependent deacetylase sirtuin-5T91940SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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