Kleinioxanthrone 3



Compound IDCDAMM01472
Common nameKleinioxanthrone 3
IUPAC name(4,5-dihydroxy-2-methyl-10-oxo-9H-anthracen-9-yl) hexadecanoate
Molecular formulaC31H42O5

Experimental data

Retention time4.61
Adduct[M+Na]+
Actual mz517.29
Theoretical mz517.292
Error4.48
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.7516

Identifiers and class information

Inchi keyKLZLSRCDCWZALP-UHFFFAOYNA-N
SmilesO=C(OC1C=2C=CC=C(O)C2C(=O)C3=C(O)C=C(C=C31)C)CCCCCCCCCCCCCCC
SuperclassBenzenoids
ClassAnthracenes

Pharmacokinetic properties

Number of descriptor values(#stars)5
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)17
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)494.67
Computed dipole moment(dipole)6.51
Total solvent accessible surface area (SASA)991.022
Hydrophobic component of SASA (FOSA)663.488
Hydrophilic component of SASA (FISA)132.643
Pie component of the SASA (PISA)194.891
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1764.69
Number of hydrogen bond donors (donorHB)0
Number of hydrogen bond acceptors (accptHB)3.5
Free energy of solvation of dipole (dip^2/V)0.0240189
Index of cohesive interaction in solids (ACxDN^.5/SA)0
Globularity descriptor (glob)0.712624
Predicted polarizability in cubic angstroms (QPpolrz)55.414
Predicted hexadecane/gas partition coefficient (QPlogPC16)17.778
Predicted octanol/gas partition coefficient (QPlogPoct)19.901
Predicted water/gas partition coefficient (QPlogPw)4.03
Predicted octanol/water partition coefficient (QPlogPo/w)8.414
Predicted aqueous solubility (QPlogS)-10.397
Conformation-independent predicted aqueous solubility (CIQPlogS)-8.729
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-7.111
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)547.072
Predicted brain/blood partition coefficient (QPlogBB)-2.202
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)257.755
Predicted skin permeability, log Kp (QPlogKp)-1.645
PM3 calculated ionization potential (IP(ev))9.224
PM3 calculated electron affinity (EA(eV))0.619
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)2.083
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)96.286
Number of nitrogen and oxygen atoms (#NandO)5
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P17612PRKACAcAMP-dependent protein kinase alpha-catalytic subunitT12808SwissTargetPrediction
Q8NER1TRPV1Vanilloid receptorT83193SwissTargetPrediction
P30307CDC25CDual specificity phosphatase Cdc25CT40569SEA
P27695APEX1DNA-(apurinic or apyrimidinic site) lyaseT13348SEA
P24723PRKCHProtein kinase C etaT40149SwissTargetPrediction
P05771PRKCBProtein kinase C betaT40276SwissTargetPrediction
Q02156PRKCEProtein kinase C epsilonT00895SwissTargetPrediction
Q05655PRKCDProtein kinase C deltaT44861SwissTargetPrediction
P30307CDC25CDual specificity phosphatase Cdc25CT40569SEA
P00390GSRGlutathione reductaseT30803SEA
P53396ACLYATP-citrate synthaseT52189SEA
P05129PRKCGProtein kinase C gammaT47107SwissTargetPrediction
Q99677LPAR4Lysophosphatidic acid receptor 4T58130SEA
Q9NYN9PTPN13FAP-1 messenger RNAT09672SEA
Q9NXA8SIRT5NAD-dependent deacetylase sirtuin-5T91940SEA
H3BPQ1TCF4Transcription factor 7-like 2T54646SEA
O75365PTP4A3Protein tyrosine phosphatase IVA 3T78019SEA
P26447S100A4S100 calcium-binding protein A4T35265SEA
Q9H6Q9KIF20BKinesin-like protein KIF20BT92865SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T12808DI0279Muscular atrophy[ICD-11: 8B61]P17612PRKACA
T83193DI0163General pain disorder[ICD-11: 8E43]Q8NER1TRPV1
T13348DI0365Retinopathy[ICD-11: 9B71]P27695APEX1
T13348DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P27695APEX1
T40149DI0184Human immunodeficiency virus disease[ICD-11: 1C60-1C62]P24723PRKCH
T40276DI0123Diffuse large B-cell lymphoma[ICD-11: 2A81]P05771PRKCB
T40276DI0241Lymphoma[ICD-11: 2A80-2A86]P05771PRKCB
T40276DI0245Malignant haematopoietic neoplasm[ICD-11: 2B33]P05771PRKCB
T00895DI0033Anxiety disorder[ICD-11: 6B00-6B0Z]Q02156PRKCE
T00895DI0243Malaria[ICD-11: 1F40-1F45]Q02156PRKCE
T44861DI0287Myocardial infarction[ICD-11: BA41-BA43]Q05655PRKCD
T30803DI0062Breast cancer[ICD-11: 2C60-2C6Y]P00390GSR
T52189DI0188Hyper-lipoproteinaemia[ICD-11: 5C80]P53396ACLY
T47107DI0012Acute myeloid leukaemia[ICD-11: 2A60]P05129PRKCG
T47107DI0248Mastocytosis[ICD-11: 2A21]P05129PRKCG
T35265DI0062Breast cancer[ICD-11: 2C60-2C6Y]P26447S100A4

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