Glucosamine 6-phosphate



Compound IDCDAMM01361
Common nameGlucosamine 6-phosphate
IUPAC name(5-amino-3,4,6-trihydroxyoxan-2-yl)methyl dihydrogen phosphate
Molecular formulaC6H14NO8P

Experimental data

Retention time7.77
Adduct[M+H]+
Actual mz260.051
Theoretical mz260.053
Error9.52
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.9637

Identifiers and class information

Inchi keyXHMJOUIAFHJHBW-UKFBFLRUSA-N
SmilesO=P(O)(O)OCC1OC(O)C(N)C(O)C1O
SuperclassOrganic oxygen compounds
ClassOrganooxygen compounds

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)2
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)9
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)259.152
Computed dipole moment(dipole)6.372
Total solvent accessible surface area (SASA)442.048
Hydrophobic component of SASA (FOSA)109.939
Hydrophilic component of SASA (FISA)328.994
Pie component of the SASA (PISA)0
Weakly polar component of the SASA (WPSA)3.116
Total solvent accesible volume (volume)722.174
Number of hydrogen bond donors (donorHB)7
Number of hydrogen bond acceptors (accptHB)12.8
Free energy of solvation of dipole (dip^2/V)0.0562146
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0766107
Globularity descriptor (glob)0.880622
Predicted polarizability in cubic angstroms (QPpolrz)16.968
Predicted hexadecane/gas partition coefficient (QPlogPC16)8.827
Predicted octanol/gas partition coefficient (QPlogPoct)23.498
Predicted water/gas partition coefficient (QPlogPw)23.897
Predicted octanol/water partition coefficient (QPlogPo/w)-4.563
Predicted aqueous solubility (QPlogS)-0.732
Conformation-independent predicted aqueous solubility (CIQPlogS)0.608
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-0.575
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.12
Predicted brain/blood partition coefficient (QPlogBB)-2.401
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.053
Predicted skin permeability, log Kp (QPlogKp)-8.781
PM3 calculated ionization potential (IP(ev))9.255
PM3 calculated electron affinity (EA(eV))0.254
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-1.384
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)165.347
Number of nitrogen and oxygen atoms (#NandO)9
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P04818TYMSThymidylate synthase (by homology)T98397SEA
P52209PGD6-phosphogluconate dehydrogenaseT76497SEA
P47900P2RY1Purinergic receptor P2Y1T67818SEA
P41231P2RY2Purinergic receptor P2Y2T93515SEA
Q15077P2RY6Pyrimidinergic receptor P2Y6T90782SEA
P63000RAC1Ras-related C3 botulinum toxin substrate 1T88752SEA
P16885PLCG2Phospholipase C-gamma-2T93922SEA
P11172UMPSUridine 5'-monophosphate synthaseT15851SEA
O94759TRPM2Transient receptor potential cation channel subfamily M member 2T78205SEA
Q15391P2RY14Purinergic receptor P2Y14T16555SEA
Q05823RNASELRNase LT25200SEA
P51575P2RX1P2X purinoceptor 1T69091SEA
Q14643ITPR1Inositol 1,4,5-trisphosphate receptor type 1T82624SEA
Q14643ITPR1Inositol 1,4,5-trisphosphate receptor type 1T82624SEA
Q99571P2RX4P2X purinoceptor 4T60330SEA
P11717IGF2RInsulin-like growth factor II receptorT59550SEA
Q13304GPR17Uracil nucleotide/cysteinyl leukotriene receptorT33902SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T98397DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P04818TYMS
T98397DI0395Stomach cancer[ICD-11: 2B72]P04818TYMS
T76497DI0337Pituitary gland disorder[ICD-11: 5A60-5A61]P52209PGD
T93515DI0436Visual system disease[ICD-11: 9E1Z]P41231P2RY2
T90782DI0025Alzheimer disease[ICD-11: 8A20]Q15077P2RY6
T88752DI0025Alzheimer disease[ICD-11: 8A20]P63000RAC1
T82624DI0190Hypertension[ICD-11: BA00-BA04]Q14643ITPR1
T82624DI0190Hypertension[ICD-11: BA00-BA04]Q14643ITPR1
T59550DI0146Fibrosis[ICD-11: GA14-GC01]P11717IGF2R
T59550DI0368Sarcoidosis[ICD-11: 4B20]P11717IGF2R

Copyright © 2025