isoquercitrin 6\'\'-O-p-hydroxybenzoate



Compound IDCDAMM01345
Common nameisoquercitrin 6\'\'-O-p-hydroxybenzoate
IUPAC name[6-[[2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-2,3-dihydrochromen-3-yl]oxy]-3,4,5-trihydroxyoxan-2-yl]methyl 4-hydroxybenzoate
Molecular formulaC28H26O14

Experimental data

Retention time0.48
Adduct[M+H]+
Actual mz587.137
Theoretical mz587.139
Error3.37
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.9651

Identifiers and class information

Inchi keyIFJGZEDRSDXZES-USWJUXOUSA-N
SmilesO=C(OCC1OC(OC2C(=O)C=3C(O)=CC(O)=CC3OC2C4=CC=C(O)C(O)=C4)C(O)C(O)C1O)C5=CC=C(O)C=C5
SuperclassPhenylpropanoids and polyketides
ClassFlavonoids

Pharmacokinetic properties

Number of descriptor values(#stars)6
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)586.505
Computed dipole moment(dipole)6.501
Total solvent accessible surface area (SASA)740.593
Hydrophobic component of SASA (FOSA)111.825
Hydrophilic component of SASA (FISA)395.986
Pie component of the SASA (PISA)232.783
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1472.91
Number of hydrogen bond donors (donorHB)7
Number of hydrogen bond acceptors (accptHB)16
Free energy of solvation of dipole (dip^2/V)0.0286937
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0571596
Globularity descriptor (glob)0.845349
Predicted polarizability in cubic angstroms (QPpolrz)46.668
Predicted hexadecane/gas partition coefficient (QPlogPC16)17.794
Predicted octanol/gas partition coefficient (QPlogPoct)35.945
Predicted water/gas partition coefficient (QPlogPw)28.923
Predicted octanol/water partition coefficient (QPlogPo/w)-0.919
Predicted aqueous solubility (QPlogS)-2.66
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.66
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.145
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)1.741
Predicted brain/blood partition coefficient (QPlogBB)-3.914
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.515
Predicted skin permeability, log Kp (QPlogKp)-6.749
PM3 calculated ionization potential (IP(ev))9.132
PM3 calculated electron affinity (EA(eV))0.596
Number of likely metabolic reactions (#metab)10
Prediction of binding to human serum albumin (QPlogKhsa)-0.752
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)245.493
Number of nitrogen and oxygen atoms (#NandO)14
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P43166CA7Carbonic anhydrase VIIT37541SEA
P22748CA4Carbonic anhydrase IVT53378SEA
P05121SERPINE1Plasminogen activator inhibitor-1T15556SEA
P20151KLK2Kallikrein 2T01908SEA
P15692VEGFAVascular endothelial growth factor AT20761SEA
P01112HRASTransforming protein p21/H-Ras-1T71081SEA
P60568IL2Interleukin-2T61698SEA
P49763PGFPlacenta growth factorT70792SEA
Q9NUW8TDP1Tyrosyl-DNA phosphodiesterase 1T33492SEA
P14679TYRTyrosinaseT97035SEA
Q9GZQ4NMUR2Neuromedin-U receptor 2T04210SEA
P52209PGD6-phosphogluconate dehydrogenaseT76497SEA
Q16678CYP1B1Cytochrome P450 1B1T92521SEA
P16152CBR1Carbonyl reductase [NADPH] 1T70518SEA
Q99417MYCBPMYCBP messenger RNAT37298SEA
P30837ALDH1B1Acetaldehyde dehydrogenaseT99641SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T53378DI0046Bacterial infection[ICD-11: 1A00-1C4Z]P22748CA4
T53378DI0166Glaucoma[ICD-11: 9C61]P22748CA4
T53378DI0372Seborrhoeic dermatitis[ICD-11: EA81]P22748CA4
T15556DI0037Asthma[ICD-11: CA23]P05121SERPINE1
T15556DI0405Thrombosis[ICD-11: DB61-GB90]P05121SERPINE1
T01908DI0213Innate/adaptive immunodeficiency[ICD-11: 4A00]P20151KLK2
T20761DI0095Colorectal cancer[ICD-11: 2B91]P15692VEGFA
T20761DI0365Retinopathy[ICD-11: 9B71]P15692VEGFA
T20761DI0430Vascular system developmental anomaly[ICD-11: LA90]P15692VEGFA
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T70792DI0095Colorectal cancer[ICD-11: 2B91]P49763PGF
T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR
T76497DI0337Pituitary gland disorder[ICD-11: 5A60-5A61]P52209PGD
T70518DI0037Asthma[ICD-11: CA23]P16152CBR1
T37298DI0235Liver cancer[ICD-11: 2C12]Q99417MYCBP
T99641DI0396Substance abuse[ICD-11: 6C40]P30837ALDH1B1

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