Neoacrimarine C



Compound IDCDAMM01343
Common nameNeoacrimarine C
IUPAC name6,10-dihydroxy-11-[(9-hydroxy-8,8-dimethyl-2-oxo-9,10-dihydropyrano[2,3-f]chromen-10-yl)oxy]-3,3,12-trimethylpyrano[2,3-c]acridin-7-one
Molecular formulaC33H29NO9

Experimental data

Retention time0.26
Adduct[2M+K]+
Actual mz1205.33
Theoretical mz1205.33
Error4.28
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.4135

Identifiers and class information

Inchi keyNQAQWRPJTRYUKE-RFTMCNCJNA-N
SmilesO=C1OC2=C(C=C1)C=CC=3OC(C)(C)C(O)C(OC=4C(O)=CC=C5C(=O)C6=C(O)C=C7OC(C=CC7=C6N(C45)C)(C)C)C32
SuperclassOrganoheterocyclic compounds
ClassQuinolines and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)5
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)583.593
Computed dipole moment(dipole)12.426
Total solvent accessible surface area (SASA)720.148
Hydrophobic component of SASA (FOSA)318.605
Hydrophilic component of SASA (FISA)168.607
Pie component of the SASA (PISA)232.936
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1505.92
Number of hydrogen bond donors (donorHB)3
Number of hydrogen bond acceptors (accptHB)10.45
Free energy of solvation of dipole (dip^2/V)0.102529
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0251336
Globularity descriptor (glob)0.88229
Predicted polarizability in cubic angstroms (QPpolrz)53.127
Predicted hexadecane/gas partition coefficient (QPlogPC16)15.506
Predicted octanol/gas partition coefficient (QPlogPoct)29.719
Predicted water/gas partition coefficient (QPlogPw)17.768
Predicted octanol/water partition coefficient (QPlogPo/w)3.352
Predicted aqueous solubility (QPlogS)-4.886
Conformation-independent predicted aqueous solubility (CIQPlogS)-8.421
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.548
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)249.457
Predicted brain/blood partition coefficient (QPlogBB)-1.182
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)110.299
Predicted skin permeability, log Kp (QPlogKp)-3.326
PM3 calculated ionization potential (IP(ev))8.035
PM3 calculated electron affinity (EA(eV))1.131
Number of likely metabolic reactions (#metab)5
Prediction of binding to human serum albumin (QPlogKhsa)0.518
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)76.513
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)135.257
Number of nitrogen and oxygen atoms (#NandO)10
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P43166CA7Carbonic anhydrase VIIT37541SEA
P11926ODC1Ornithine decarboxylaseT60366SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T60366DI0020African trypanosomiasis[ICD-11: 1F51]P11926ODC1

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