7-(4-Carboxy-3-hydroxy-3-methylbutanoyl)sudachitin 4\'-glucoside



Compound IDCDAMM01219
Common name7-(4-Carboxy-3-hydroxy-3-methylbutanoyl)sudachitin 4\'-glucoside
IUPAC name3-hydroxy-5-[5-hydroxy-6,8-dimethoxy-2-[3-methoxy-4-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphenyl]-4-oxochromen-7-yl]oxy-3-methyl-5-oxopentanoic acid
Molecular formulaC30H34O17

Experimental data

Retention time22.34
Adduct[M+NH4]+
Actual mz684.213
Theoretical mz684.214
Error1.93
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.5595

Identifiers and class information

Inchi keyFPEYXBLVSDJZDD-UHFFFAOYNA-N
SmilesO=C(O)CC(O)(C)CC(=O)OC1=C(OC)C(O)=C2C(=O)C=C(OC2=C1OC)C=3C=CC(OC4OC(CO)C(O)C(O)C4O)=C(OC)C3
SuperclassPhenylpropanoids and polyketides
ClassFlavonoids

Pharmacokinetic properties

Number of descriptor values(#stars)7
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)17
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)666.588
Computed dipole moment(dipole)6.758
Total solvent accessible surface area (SASA)916.05
Hydrophobic component of SASA (FOSA)421.256
Hydrophilic component of SASA (FISA)386.207
Pie component of the SASA (PISA)108.587
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1800.11
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)18
Free energy of solvation of dipole (dip^2/V)0.0253703
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0439378
Globularity descriptor (glob)0.781229
Predicted polarizability in cubic angstroms (QPpolrz)56.008
Predicted hexadecane/gas partition coefficient (QPlogPC16)19.565
Predicted octanol/gas partition coefficient (QPlogPoct)36.792
Predicted water/gas partition coefficient (QPlogPw)26.592
Predicted octanol/water partition coefficient (QPlogPo/w)0.692
Predicted aqueous solubility (QPlogS)-3.768
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.326
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.782
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.546
Predicted brain/blood partition coefficient (QPlogBB)-4.68
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.187
Predicted skin permeability, log Kp (QPlogKp)-6.623
PM3 calculated ionization potential (IP(ev))9.091
PM3 calculated electron affinity (EA(eV))1.137
Number of likely metabolic reactions (#metab)11
Prediction of binding to human serum albumin (QPlogKhsa)-0.872
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)272.362
Number of nitrogen and oxygen atoms (#NandO)17
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P60568IL2Interleukin-2T61698SEA
Q9UNQ0ABCG2ATP-binding cassette sub-family G member 2T56556SEA
Q9GZQ4NMUR2Neuromedin-U receptor 2T04210SEA
Q16678CYP1B1Cytochrome P450 1B1T92521SEA
Q13332PTPRSReceptor-type tyrosine-protein phosphatase ST10147SEA
Q9NZ08ERAP1Endoplasmic reticulum aminopeptidase 1T72849SEA
P05231IL6Interleukin-6T32578SEA
P16220CREB1Cyclic AMP-responsive element-binding proteinT92098SEA
P30837ALDH1B1Acetaldehyde dehydrogenaseT99641SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T56556DI0218Irritable bowel syndrome[ICD-11: DD91]Q9UNQ0ABCG2
T56556DI0366Rheumatoid arthritis[ICD-11: FA20]Q9UNQ0ABCG2
T10147DI0057Bone paget disease[ICD-11: FB85]Q13332PTPRS
T32578DI0028Anemia[ICD-11: 3A00-3A9Z]P05231IL6
T99641DI0396Substance abuse[ICD-11: 6C40]P30837ALDH1B1

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