Marianoside B



Compound IDCDAMM01173
Common nameMarianoside B
IUPAC name2-(hydroxymethyl)-6-[[4,4,10,13,14-pentamethyl-17-(6-methyl-5-methylideneheptan-2-yl)-2,3,5,6,7,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]oxane-3,4,5-triol
Molecular formulaC37H62O6

Experimental data

Retention time17.69
Adduct[M+H]+
Actual mz603.456
Theoretical mz603.462
Error11.06
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.0874

Identifiers and class information

Inchi keyPHOVCZWDVRTEJJ-RRYRNIOWNA-N
SmilesOCC1OC(OC2CCC3(C4=C(CCC3C2(C)C)C5(C)CCC(C(C)CCC(=C)C(C)C)C5(C)CC4)C)C(O)C(O)C1O
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)4
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)12
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)602.893
Computed dipole moment(dipole)3.445
Total solvent accessible surface area (SASA)959.797
Hydrophobic component of SASA (FOSA)787.358
Hydrophilic component of SASA (FISA)146.095
Pie component of the SASA (PISA)26.344
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1931.68
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)10.2
Free energy of solvation of dipole (dip^2/V)0.0061442
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0212545
Globularity descriptor (glob)0.781524
Predicted polarizability in cubic angstroms (QPpolrz)63.698
Predicted hexadecane/gas partition coefficient (QPlogPC16)18.183
Predicted octanol/gas partition coefficient (QPlogPoct)32.466
Predicted water/gas partition coefficient (QPlogPw)16.46
Predicted octanol/water partition coefficient (QPlogPo/w)5.693
Predicted aqueous solubility (QPlogS)-7.629
Conformation-independent predicted aqueous solubility (CIQPlogS)-7.234
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.193
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)407.832
Predicted brain/blood partition coefficient (QPlogBB)-1.754
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)187.64
Predicted skin permeability, log Kp (QPlogKp)-2.967
PM3 calculated ionization potential (IP(ev))9.182
PM3 calculated electron affinity (EA(eV))-0.962
Number of likely metabolic reactions (#metab)8
Prediction of binding to human serum albumin (QPlogKhsa)1.17
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)81.085
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)98.017
Number of nitrogen and oxygen atoms (#NandO)6
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P40763STAT3Signal transducer and activator of transcription 3T29130SwissTargetPrediction
P60568IL2Interleukin-2T61698SwissTargetPrediction
P14679TYRTyrosinaseT97035SEA
Q13526PIN1Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1T16308SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T29130DI0351Psoriasis[ICD-11: EA90]P40763STAT3
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR
T16308DI0238Lung cancer[ICD-11: 2C25]Q13526PIN1

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