Siccanochromene B



Compound IDCDAMM01073
Common nameSiccanochromene B
IUPAC name2-[2-(5,5-dimethyl-1-oxaspiro[2.5]octan-4-yl)ethyl]-2,7-dimethylchromen-5-ol
Molecular formulaC22H30O3

Experimental data

Retention time12.25
Adduct[2M+NH4]2+
Actual mz351.238
Theoretical mz351.236
Error6.52
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.703

Identifiers and class information

Inchi keyOAQYEIUJYLXPKM-RXEWNDAWNA-N
SmilesOC1=CC(=CC=2OC(C=CC12)(C)CCC3C4(OC4)CCCC3(C)C)C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)4
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)0
Molecular weight (mol_MW)342.477
Computed dipole moment(dipole)4.212
Total solvent accessible surface area (SASA)616.815
Hydrophobic component of SASA (FOSA)449.955
Hydrophilic component of SASA (FISA)46.714
Pie component of the SASA (PISA)120.146
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1150.47
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)3.5
Free energy of solvation of dipole (dip^2/V)0.015422
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0056743
Globularity descriptor (glob)0.860851
Predicted polarizability in cubic angstroms (QPpolrz)38.467
Predicted hexadecane/gas partition coefficient (QPlogPC16)10.341
Predicted octanol/gas partition coefficient (QPlogPoct)15.724
Predicted water/gas partition coefficient (QPlogPw)6.368
Predicted octanol/water partition coefficient (QPlogPo/w)4.865
Predicted aqueous solubility (QPlogS)-5.588
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.148
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.357
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)3572.01
Predicted brain/blood partition coefficient (QPlogBB)-0.098
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)1958.77
Predicted skin permeability, log Kp (QPlogKp)-1.573
PM3 calculated ionization potential (IP(ev))8.694
PM3 calculated electron affinity (EA(eV))0.14
Number of likely metabolic reactions (#metab)2
Prediction of binding to human serum albumin (QPlogKhsa)0.913
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)38.323
Number of nitrogen and oxygen atoms (#NandO)3
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P16050ALOX15Arachidonate 15-lipoxygenaseT16042SwissTargetPrediction
P18054ALOX12Arachidonate 12-lipoxygenaseT35527SwissTargetPrediction

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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